8GSF image
Deposition Date 2022-09-06
Release Date 2022-12-14
Last Version Date 2025-06-04
Entry Detail
PDB ID:
8GSF
Keywords:
VIRUS/IMMUNE SYSTEM
Title:
Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Echovirus E3 (Taxon ID: 47516)
Host Organism:
Mus musculus
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8GSF validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP1
Chain IDs:A (auth: 1), D (auth: A)
Chain Length:237
Number of Molecules:2
Biological Source:Echovirus E3
UniProt ID:A0A060BKX4 Pfam ID:PF00073
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP0
Chain IDs:B (auth: 2), E (auth: B)
Chain Length:250
Number of Molecules:2
Biological Source:Echovirus E3
UniProt ID:A0A0K0LDT3 Pfam ID:PF00073
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:VP3
Chain IDs:C (auth: 3), F (auth: C)
Chain Length:234
Number of Molecules:2
Biological Source:Echovirus E3
UniProt ID:A0A0K0LDT3 Pfam ID:PF00073
Polymer Type:polypeptide(L)
Molecule:Heavy chain of 6D10
Chain IDs:G (auth: H), I (auth: E)
Chain Length:117
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Light chain of 6D10
Chain IDs:H (auth: L), J (auth: F)
Chain Length:114
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
NA
Primary Citation
Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody.
Viruses 14 ? ? (2022)
PMID: 36366420 DOI: 10.3390/v14112322

Abstact

Echovirus 3 (E3), a serotype of human enterovirus B (HEV-B), causes severe diseases in infants. Here, we determined the structures of E3 with a monoclonal antibody (MAb) 6D10 by cryo-EM to comprehensively understand the specificities and the immunological characteristic of this serotype. The solved cryo-EM structures of the F-, A-, and E-particles of E3 bound with 6D10 revealed the structural features of the virus-antibody interface. Importantly, the structures of E-particles bound with 6D10 revealed for the first time the nature of the C-terminus of VP1 for HEV-Bs at the structural level. The highly immunogenic nature of this region in the E-particles provides new strategies for vaccine development for HEV-Bs.

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Disease

Primary Citation of related structures
8GSF