8GSD image
Deposition Date 2022-09-06
Release Date 2022-12-14
Last Version Date 2025-05-28
Entry Detail
PDB ID:
8GSD
Title:
Echovirus3 full particle in complex with 6D10 Fab
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Echovirus E3 (Taxon ID: 47516)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein (Fragment)
Chain IDs:C (auth: 1)
Chain Length:292
Number of Molecules:1
Biological Source:Echovirus E3
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:D (auth: 2)
Chain Length:260
Number of Molecules:1
Biological Source:Echovirus E3
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:E (auth: 3)
Chain Length:238
Number of Molecules:1
Biological Source:Echovirus E3
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein (Fragment)
Chain IDs:F (auth: 4)
Chain Length:69
Number of Molecules:1
Biological Source:Echovirus E3
Polymer Type:polypeptide(L)
Molecule:Heavy chain of 6D10
Chain IDs:A (auth: H)
Chain Length:117
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Light chain of 6D10
Chain IDs:B (auth: L)
Chain Length:114
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural Basis for the Immunogenicity of the C-Terminus of VP1 of Echovirus 3 Revealed by the Binding of a Neutralizing Antibody.
Viruses 14 ? ? (2022)
PMID: 36366420 DOI: 10.3390/v14112322

Abstact

Echovirus 3 (E3), a serotype of human enterovirus B (HEV-B), causes severe diseases in infants. Here, we determined the structures of E3 with a monoclonal antibody (MAb) 6D10 by cryo-EM to comprehensively understand the specificities and the immunological characteristic of this serotype. The solved cryo-EM structures of the F-, A-, and E-particles of E3 bound with 6D10 revealed the structural features of the virus-antibody interface. Importantly, the structures of E-particles bound with 6D10 revealed for the first time the nature of the C-terminus of VP1 for HEV-Bs at the structural level. The highly immunogenic nature of this region in the E-particles provides new strategies for vaccine development for HEV-Bs.

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Protein

Chemical

Disease

Primary Citation of related structures