ISDA

Entry Detail

PDB ID:

8GRQ

EMDB ID:

EMD-34212

Keywords:

NUCLEAR PROTEIN

Title:

Cryo-EM structure of BRCA1/BARD1 bound to H2AK127-UbcH5c-Ub nucleosome

Biological Source:

Source Organism:

Homo sapiens

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2022-09-02

Release Date:

2023-04-12

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.87 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H3
Chain IDs:A, E
Chain Length:98
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q71DI3 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:B, F
Chain Length:80
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Description:Histone H2A type 1-H
Chain IDs:C, G
Chain Length:110
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Description:H2B
Chain IDs:D, H
Chain Length:188
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O60814 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Description:DNA (147-MER)
Chain IDs:I
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polydeoxyribonucleotide
Description:DNA (147-MER)
Chain IDs:J
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Description:Breast cancer type 1 susceptibility protein
Chain IDs:K
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P38398 Pfam ID:PF00097

Protein Blast

Polymer Type:polypeptide(L)
Description:BRCA1-associated RING domain protein 1
Chain IDs:L (auth: M)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q99728 Pfam ID:PF14835

Protein Blast

Polymer Type:polypeptide(L)
Description:Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast), isoform CRA_a
Chain IDs:M (auth: N)
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P61077 Pfam ID:PF00179

Ligand Molecules

Primary Citation

Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination.

Ai, H.S, Tong, Z, Deng, Z, Tian, J, Zhang, L, Sun, M, Du, Y, Xu, Z, Shi, Q, Liang, L, Zheng, Q, Li, J.B, Pan, M, Liu, L.Show

Chem ? ? ? (2023)

DOI: 10.1016/j.chempr.2023.01.012

Primary Citation of related structures