8GRM image
Entry Detail
PDB ID:
8GRM
EMDB ID:
Keywords:
Title:
Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-09-02
Release Date:
2023-04-12
Method Details:
Experimental Method:
Resolution:
3.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone H3
Chain IDs:A, E
Chain Length:98
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H4
Chain IDs:B, F
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2A type 1-B/E
Chain IDs:C, G
Chain Length:109
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2B type 1-K
Chain IDs:D
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Histone H2B type 1-K
Chain IDs:H
Chain Length:95
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (144-MER)
Chain IDs:K (auth: I)
Chain Length:144
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Description:DNA (145-MER)
Chain IDs:L (auth: J)
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:COMMD3 protein
Chain IDs:I (auth: M)
Chain Length:101
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ring1B
Chain IDs:J (auth: N)
Chain Length:101
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ubiquitin
Chain IDs:M (auth: O)
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:UbcH5b
Chain IDs:N (auth: P)
Chain Length:146
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination.
Chem ? ? ? (2023)
DOI: 10.1016/j.chempr.2023.01.012
Primary Citation of related structures