8GNH image
Entry Detail
PDB ID:
8GNH
EMDB ID:
Title:
Complex structure of BD-218 and Spike protein
Biological Source:
PDB Version:
Deposition Date:
2022-08-23
Release Date:
2023-08-30
Method Details:
Experimental Method:
Resolution:
3.74 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:R682G, R683S, R685S, K986P, V987P
Chain IDs:A, B, C
Chain Length:1208
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:Heavy chain of BD-218
Chain IDs:D (auth: H)
Chain Length:321
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Light chain of BD-218
Chain IDs:E (auth: L)
Chain Length:232
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Human antibody BD-218 has broad neutralizing activity against concerning variants of SARS-CoV-2.
Int.J.Biol.Macromol. 227 896 902 (2023)
PMID: 36528147 DOI: 10.1016/j.ijbiomac.2022.12.120

Abstact

As SARS-CoV-2 variants of concern (VOC) reduce the effectiveness of existing anti-COVID therapeutics, it is increasingly critical to identify highly potent neutralizing antibodies (nAbs) that bind to conserved regions across multiple variants, especially beta, delta, and omicron variants. Using single-cell sequencing with biochemical methods and pseudo-typed virus neutralization experiments, here we report the characterization of a potent nAb BD-218, identified from an early screen of patients recovering from the original virus. We have determined the cryo-EM structure of the BD-218/spike protein complex to define its epitope in detail, which revealed that BD-218 interacts with a novel epitope on the receptor-binding domain (RBD) of the spike protein. We concluded that BD-218 is a highly effective and broadly active nAb against SARS-CoV-2 variants with promising potential for therapeutic development.

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Primary Citation of related structures