8GMR image
Deposition Date 2023-03-27
Release Date 2023-07-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8GMR
Title:
Cryo-EM structure of octameric human CALHM1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.76 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calcium homeostasis modulator protein 1
Gene (Uniprot):CALHM1
Chain IDs:A (auth: B), B (auth: A), C, D, E, F, G, H
Chain Length:314
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of human CALHM1 reveals key locations for channel regulation and blockade by ruthenium red.
Nat Commun 14 3821 3821 (2023)
PMID: 37380652 DOI: 10.1038/s41467-023-39388-3

Abstact

Calcium homeostasis modulator 1 (CALHM1) is a voltage-dependent channel involved in neuromodulation and gustatory signaling. Despite recent progress in the structural biology of CALHM1, insights into functional regulation, pore architecture, and channel blockade remain limited. Here we present the cryo-EM structure of human CALHM1, revealing an octameric assembly pattern similar to the non-mammalian CALHM1s and the lipid-binding pocket conserved across species. We demonstrate by MD simulations that this pocket preferentially binds a phospholipid over cholesterol to stabilize its structure and regulate the channel activities. Finally, we show that residues in the amino-terminal helix form the channel pore that ruthenium red binds and blocks.

Legend

Protein

Chemical

Disease

Primary Citation of related structures