8GMH image
Deposition Date 2023-03-25
Release Date 2024-01-10
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8GMH
Keywords:
Title:
Crystal Structure of the ternary complex of TelA-LXG, LapA3, and LapA4
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LXG domain-containing protein
Gene (Uniprot):SIR_0169
Chain IDs:A (auth: B), D (auth: A)
Chain Length:238
Number of Molecules:2
Biological Source:Streptococcus intermedius B196
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LapA4
Chain IDs:B (auth: C), E
Chain Length:141
Number of Molecules:2
Biological Source:Streptococcus intermedius B196
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LapA3
Gene (Uniprot):SIR_0167
Chain IDs:C (auth: D), F
Chain Length:88
Number of Molecules:2
Biological Source:Streptococcus intermedius B196
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Structure of a tripartite protein complex that targets toxins to the type VII secretion system.
Proc.Natl.Acad.Sci.USA 121 e2312455121 e2312455121 (2024)
PMID: 38194450 DOI: 10.1073/pnas.2312455121

Abstact

Type VII secretion systems are membrane-embedded nanomachines used by Gram-positive bacteria to export effector proteins from the cytoplasm to the extracellular environment. Many of these effectors are polymorphic toxins comprised of an N-terminal Leu-x-Gly (LXG) domain of unknown function and a C-terminal toxin domain that inhibits the growth of bacterial competitors. In recent work, it was shown that LXG effectors require two cognate Lap proteins for T7SS-dependent export. Here, we present the 2.6 Å structure of the LXG domain of the TelA toxin from the opportunistic pathogen Streptococcus intermedius in complex with both of its cognate Lap targeting factors. The structure reveals an elongated α-helical bundle within which each Lap protein makes extensive hydrophobic contacts with either end of the LXG domain. Remarkably, despite low overall sequence identity, we identify striking structural similarity between our LXG complex and PE-PPE heterodimers exported by the distantly related ESX type VII secretion systems of Mycobacteria implying a conserved mechanism of effector export among diverse Gram-positive bacteria. Overall, our findings demonstrate that LXG domains, in conjunction with their cognate Lap targeting factors, represent a tripartite secretion signal for a widespread family of T7SS toxins.

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Primary Citation of related structures