ISDA

Deposition Date 2023-03-21

Release Date 2024-01-31

Last Version Date 2024-11-06

Entry Detail

PDB ID:

8GL8

Keywords:

MEMBRANE PROTEIN

Title:

The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex

Biological Source:

Source Organism:

Flavobacterium johnsoniae (Taxon ID: 986)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein involved in gliding motility SprA
Gene (Uniprot):SAMN05444388_101261
Chain IDs:A
Chain Length:2403
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

UniProt ID:A0A1M5G5I4 Pfam ID:PF14349

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase
Gene (Uniprot):Fjoh_4997
Chain IDs:B
Chain Length:176
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

UniProt ID:A5F9W9 Pfam ID:PF00254

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RemZ
Gene (Uniprot):Fjoh_0803
Chain IDs:D
Chain Length:1114
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

UniProt ID:A5FLT3

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Type IX secretion system protein PorV domain-containing protein
Gene (Uniprot):Fjoh_1555
Chain IDs:C (auth: F)
Chain Length:402
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

UniProt ID:A5FJM7 Pfam ID:PF19572

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Periplasmic chaperone for outer membrane proteins Skp
Gene (Uniprot):SAMN05444388_101223
Chain IDs:E (auth: G), F (auth: C), G (auth: E)
Chain Length:341
Number of Molecules:3
Biological Source:Flavobacterium johnsoniae

UniProt ID:A0A1M5G3C1 Pfam ID:PF03938

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SprE
Gene (Uniprot):sprE
Chain IDs:H (auth: I)
Chain Length:870
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

UniProt ID:A1E5T9 Pfam ID:PF13174

Ligand Molecules

LMN

MAN

Primary Citation

The Type 9 Secretion System caught in the act of transport

Lauber, F, Deme, J.C, Liu, X, Kjaer, A, Miller, H.L, Alcock, F, Lea, S.M, Berks, B.C.Show

Nat Microbiol ? ? ? (2024)

Primary Citation of related structures