8GJV image
Deposition Date 2023-03-16
Release Date 2023-06-21
Last Version Date 2024-09-11
Entry Detail
PDB ID:
8GJV
Keywords:
Title:
Chemical synthesis of maxamycins: Intermediate compound 10
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
0.90 Å
R-Value Free:
0.13
R-Value Work:
0.11
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Intermediate compound 10 for maxamycins synthesis
Chain IDs:A, B, C, D
Chain Length:8
Number of Molecules:4
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Divergent Total Synthesis and Characterization of Maxamycins.
J.Am.Chem.Soc. 145 12837 12852 (2023)
PMID: 37278486 DOI: 10.1021/jacs.3c03710

Abstact

A new streamlined and scaled divergent total synthesis of pocket-modified vancomycin analogs is detailed that provides a common late-stage intermediate [Ψ[C(═S)NH]Tpg4]vancomycin (LLS = 18 steps, 12% overall yield, >5 g prepared) to access both existing and future pocket modifications. Highlights of the approach include an atroposelective synthesis of [Ψ[C(═S)NH]Tpg4]vancomycin aglycon (11), a one-pot enzymatic glycosylation for direct conversion to [Ψ[C(═S)NH]Tpg4]vancomycin (12), and new powerful methods for the late-stage conversion of the embedded thioamide to amidine/aminomethylene pocket modifications. Incorporation of two peripheral modifications provides a scalable total synthesis of the maxamycins, all prepared from aglycon 11 without use of protecting groups. Thus, both existing and presently unexplored pocket-modified analogues paired with a range of peripheral modifications are accessible from this common thioamide intermediate. In addition to providing an improved synthesis of the initial member of the maxamycins, this is illustrated herein with the first synthesis and examination of maxamycins that contain the most effective of the pocket modifications (amidine) described to date combined with two additional peripheral modifications. These new amidine-based maxamycins proved to be potent, durable, and efficacious antimicrobial agents that display equipotent activity against vancomycin-sensitive and vancomycin-resistant Gram-positive organisms and act by three independent synergistic mechanisms of action. In the first such study conducted to date, one new maxamycin (21, MX-4) exhibited efficacious in vivo activity against a feared and especially challenging multidrug-resistant (MRSA) and vancomycin-resistant (VRSA) S. aureus bacterial strain (VanA VRS-2) for which vancomycin is inactive.

Legend

Protein

Chemical

Disease

Primary Citation of related structures