8GAT image
Deposition Date 2023-02-23
Release Date 2024-02-28
Last Version Date 2025-06-04
Entry Detail
PDB ID:
8GAT
Title:
Structure of human NDS.1 Fab and 1G01 Fab in complex with influenza virus neuraminidase from A/Indiana/10/2011 (H3N2v), based on consensus cryo-EM map with only Fab 1G01 resolved
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vasodilator-stimulated phosphoprotein, Neuraminidase chimera
Gene (Uniprot):NA, VASP
Chain IDs:A
Chain Length:466
Number of Molecules:1
Biological Source:Homo sapiens, Influenza A virus (A/Indiana/10/2011(H3N2))
Polymer Type:polypeptide(L)
Molecule:Fab 1G01, heavy chain
Chain IDs:B (auth: M)
Chain Length:240
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab 1G01, light chain
Chain IDs:C (auth: N)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Protective human monoclonal antibodies target conserved sites of vulnerability on the underside of influenza virus neuraminidase.
Immunity 57 574 586.e7 (2024)
PMID: 38430907 DOI: 10.1016/j.immuni.2024.02.003

Abstact

Continuously evolving influenza viruses cause seasonal epidemics and pose global pandemic threats. Although viral neuraminidase (NA) is an effective drug and vaccine target, our understanding of the NA antigenic landscape still remains incomplete. Here, we describe NA-specific human antibodies that target the underside of the NA globular head domain, inhibit viral propagation of a wide range of human H3N2, swine-origin variant H3N2, and H2N2 viruses, and confer both pre- and post-exposure protection against lethal H3N2 infection in mice. Cryo-EM structures of two such antibodies in complex with NA reveal non-overlapping epitopes covering the underside of the NA head. These sites are highly conserved among N2 NAs yet inaccessible unless the NA head tilts or dissociates. Our findings help guide the development of effective countermeasures against ever-changing influenza viruses by identifying hidden conserved sites of vulnerability on the NA underside.

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Primary Citation of related structures