8G8K image
Deposition Date 2023-02-18
Release Date 2023-06-07
Last Version Date 2024-05-22
Entry Detail
PDB ID:
8G8K
Title:
Crystal structure of Rv1916 (residues 233-398)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.54 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative isocitrate lyase subunit B
Gene (Uniprot):aceAb
Chain IDs:A
Chain Length:162
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis H37Rv
Primary Citation
Mycobacterium tuberculosis Rv1916 is an Acetyl-CoA-Binding Protein.
Chembiochem 24 e202300162 e202300162 (2023)
PMID: 37211532 DOI: 10.1002/cbic.202300162

Abstact

Isocitrate lyase (ICL) isoform 2 is an essential enzyme for some clinical Mycobacterium tuberculosis (Mtb) strains during infection. In the laboratory Mtb strain H37Rv, the icl2 gene encodes two distinct gene products - Rv1915 and Rv1916 - due to a frameshift mutation. This study aims to characterise these two gene products to understand their structure and function. While we were unable to produce Rv1915 recombinantly, soluble Rv1916 was obtained with sufficient yield for characterisation. Kinetic studies using UV-visible spectrophotometry and 1 H-NMR spectroscopy showed that recombinant Rv1916 does not possess isocitrate lyase activity, while waterLOGSY binding experiments demonstrated that it could bind acetyl-CoA. Finally, X-ray crystallography revealed structural similarities between Rv1916 and the C-terminal domain of ICL2. Considering the probable differences between full-length ICL2 and the gene products Rv1915 and Rv1916, care must be taken when using Mtb H37Rv as a model organism to study central carbon metabolism.

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Primary Citation of related structures
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