8G7U image
Deposition Date 2023-02-17
Release Date 2023-11-15
Last Version Date 2025-05-28
Entry Detail
PDB ID:
8G7U
Title:
Cryo-EM structure of Riplet:RIG-I:dsRNA complex (end-semi-closed end)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Antiviral innate immune response receptor RIG-I
Gene (Uniprot):RIGI
Chain IDs:A, C
Chain Length:925
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RNF135
Gene (Uniprot):RNF135
Chain IDs:B, D
Chain Length:432
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:p3dsRNA24a
Chain IDs:E (auth: X)
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:p3dsRNA24b
Chain IDs:F (auth: Y)
Chain Length:24
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The E3 ligase Riplet promotes RIG-I signaling independent of RIG-I oligomerization.
Nat Commun 14 7308 7308 (2023)
PMID: 37951994 DOI: 10.1038/s41467-023-42982-0

Abstact

RIG-I is an essential innate immune receptor that responds to infection by RNA viruses. The RIG-I signaling cascade is mediated by a series of post-translational modifications, the most important of which is ubiquitination of the RIG-I Caspase Recruitment Domains (CARDs) by E3 ligase Riplet. This is required for interaction between RIG-I and its downstream adapter protein MAVS, but the mechanism of action remains unclear. Here we show that Riplet is required for RIG-I signaling in the presence of both short and long dsRNAs, establishing that Riplet activation does not depend upon RIG-I filament formation on long dsRNAs. Likewise, quantitative Riplet-RIG-I affinity measurements establish that Riplet interacts with RIG-I regardless of whether the receptor is bound to RNA. To understand this, we solved high-resolution cryo-EM structures of RIG-I/RNA/Riplet complexes, revealing molecular interfaces that control Riplet-mediated activation and enabling the formulation of a unified model for the role of Riplet in signaling.

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Primary Citation of related structures