8G74 image
Deposition Date 2023-02-16
Release Date 2024-01-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8G74
Title:
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:B (auth: A), C (auth: B), E (auth: D)
Chain Length:1234
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:Nanosota-3
Chain IDs:A (auth: E), D (auth: C)
Chain Length:136
Number of Molecules:2
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
Discovery of Nanosota-2, -3, and -4 as super potent and broad-spectrum therapeutic nanobody candidates against COVID-19.
J.Virol. 97 e0144823 e0144823 (2023)
PMID: 37855638 DOI: 10.1128/jvi.01448-23

Abstact

The COVID-19 pandemic exposed limitations of conventional antibodies as therapeutics, including high cost, limited potency, ineffectiveness against new viral variants, and primary reliance on injection-only delivery. Nanobodies are single-domain antibodies with therapeutic potentials. We discovered three anti-SARS-CoV-2 nanobodies, named Nanosota-2, -3, and -4, from an immunized alpaca. Nanosota-2 is super potent against prototypic SARS-CoV-2, Nanosota-3 is highly potent against the omicron variant, and Nanosota-4 is effective against both SARS-CoV-1 and SARS-CoV-2. In addition to their super potency and combined broad antiviral spectrum, these nanobodies are cost-effective, can be easily adapted to new viral variants through phage display, and can potentially be administered as inhalers. The Nanosota series are powerful therapeutic candidates to combat circulating SARS-CoV-2 and prepare for possible future coronavirus pandemics.

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Primary Citation of related structures