8G4B image
Deposition Date 2023-02-09
Release Date 2026-01-28
Last Version Date 2026-01-28
Entry Detail
PDB ID:
8G4B
Keywords:
Title:
Crystal structure of heterodimeric Crotoxin B from Crotalus durissus collilineatus
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.89 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phospholipase A2 crotoxin basic subunit CBb
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Crotalus durissus collilineatus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phospholipase A2 crotoxin basic subunit CBd
Chain IDs:B
Chain Length:122
Number of Molecules:1
Biological Source:Crotalus durissus collilineatus
Ligand Molecules
Primary Citation
Structural studies with crotoxin B from Crotalus durissus collilineatus venom suggest a heterodimeric assembly formed by two new isoforms.
Biochimie 218 46 56 (2024)
PMID: 37659716 DOI: 10.1016/j.biochi.2023.08.018

Abstact

In accidents involving Crotalus snakes, the crotoxin complex (CTX) plays lethal action due to its neurotoxic activity. On the other hand, CTX have potential biotechnological application due to its anti-tumoral, anti-inflammatory, antimicrobial, analgesic and immunomodulatory properties. CTX is a heterodimer composed of Crotoxin A (CA or crotapotin), the acidic nontoxic and non-enzymatic component and; Crotoxin B (CB), a basic, toxic and catalytic PLA2. Currently, there are two classes of CTX isoforms, whose differences in their biological activities have been attributed to features presented in CB isoforms. Here, we present the crystal structure of CB isolated from the Crotalus durissus collilineatus venom. It amino acid sequence was assigned using the SEQUENCE SLIDER software, which revealed that the crystal structure is a heterodimer composed of two new CB isoforms (colCB-A and colCB-B). Bioinformatic and biophysical analyses showed that the toxin forms a tetrameric assembly in solution similar to CB from Crotalus durissus terrificus venom, despite some differences observed at the dimeric interface. By the previously proposed classification, the colCB-B presents features of the class I isoforms while colCB-A cannot be classified into classes I and II based on its amino acid sequence. Due to similar features observed for other CB isoforms found in the NCBI database and the results obtained for colCB-A, we suggest that there are more than two classes of CTX and CB isoforms in crotalic venoms.

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Primary Citation of related structures
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