8G3G image
Entry Detail
PDB ID:
8G3G
EMDB ID:
Keywords:
Title:
CryoEM structure of yeast recombination mediator Rad52
Biological Source:
PDB Version:
Deposition Date:
2023-02-07
Release Date:
2023-11-15
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA repair and recombination protein RAD52
Chain IDs:A (auth: J), B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F), H (auth: G), I (auth: H), J (auth: I)
Chain Length:471
Number of Molecules:10
Biological Source:Saccharomyces cerevisiae S288C
Ligand Molecules
Primary Citation
Yeast Rad52 is a homodecamer and possesses BRCA2-like bipartite Rad51 binding modes.
Nat Commun 14 6215 6215 (2023)
PMID: 37798272 DOI: 10.1038/s41467-023-41993-1

Abstact

Homologous recombination (HR) is an essential double-stranded DNA break repair pathway. In HR, Rad52 facilitates the formation of Rad51 nucleoprotein filaments on RPA-coated ssDNA. Here, we decipher how Rad52 functions using single-particle cryo-electron microscopy and biophysical approaches. We report that Rad52 is a homodecameric ring and each subunit possesses an ordered N-terminal and disordered C-terminal half. An intrinsic structural asymmetry is observed where a few of the C-terminal halves interact with the ordered ring. We describe two conserved charged patches in the C-terminal half that harbor Rad51 and RPA interacting motifs. Interactions between these patches regulate ssDNA binding. Surprisingly, Rad51 interacts with Rad52 at two different bindings sites: one within the positive patch in the disordered C-terminus and the other in the ordered ring. We propose that these features drive Rad51 nucleation onto a single position on the DNA to promote formation of uniform pre-synaptic Rad51 filaments in HR.

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Primary Citation of related structures