8G3D image
Deposition Date 2023-02-07
Release Date 2023-06-14
Last Version Date 2024-10-30
Entry Detail
PDB ID:
8G3D
Keywords:
STRUCTURAL PROTEIN
Title:
48-nm doublet microtubule from Tetrahymena thermophila strain K40R
Biological Source:
Source Organism:
Tetrahymena thermophila (Taxon ID: 5911)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.70 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
8G3D validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB27A
Gene (Uniprot):TTHERM_00522810
Chain IDs:A (auth: 0A), P (auth: 1A), NA (auth: 2A), KB (auth: 3A)
Chain Length:236
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:I7LUL4
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB38
Gene (Uniprot):TTHERM_00758860
Chain IDs:B (auth: 0B)
Chain Length:329
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q23JL9
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAM166B
Gene (Uniprot):TTHERM_01052990
Chain IDs:C (auth: 0C), R (auth: 1C)
Chain Length:156
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:Q235M9 Pfam ID:PF10629
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAM166A
Gene (Uniprot):TTHERM_00449470
Chain IDs:D (auth: 0D), S (auth: 1D), QA (auth: 2D)
Chain Length:225
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:Q238X3 Pfam ID:PF10629
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB22
Gene (Uniprot):TTHERM_00691900
Chain IDs:E (auth: 0E), T (auth: 1E), RA (auth: 2E), OB (auth: 3E)
Chain Length:191
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:I7LT67 Pfam ID:PF13499
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAM166C
Gene (Uniprot):TTHERM_01109800
Chain IDs:F (auth: 0F)
Chain Length:219
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q22B75
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP107
Gene (Uniprot):TTHERM_00320040
Chain IDs:G (auth: 0G), V (auth: 1G)
Chain Length:183
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:Q237T1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP127
Gene (Uniprot):TTHERM_00338110
Chain IDs:H (auth: 0H), W (auth: 1H)
Chain Length:447
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:I7LV70 Pfam ID:PF13868
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP161A
Gene (Uniprot):TTHERM_00155380
Chain IDs:I (auth: 0N), CA (auth: 1N), ZA (auth: 2N)
Chain Length:492
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:Q22WJ6
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP20
Gene (Uniprot):TTHERM_00418580
Chain IDs:J (auth: 0Q), FA (auth: 1Q), CB (auth: 2Q), TB (auth: 3Q), DC (auth: 4Q), SC (auth: 5Q), YC (auth: 6Q)
Chain Length:195
Number of Molecules:7
Biological Source:Tetrahymena thermophila
UniProt ID:Q22NU3 Pfam ID:PF05018
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Parkin co-regulated protein PACRGA
Gene (Uniprot):TTHERM_00446290
Chain IDs:K (auth: 0S), HA (auth: 1S), EB (auth: 2S), VB (auth: 3S)
Chain Length:319
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:I7MLV6 Pfam ID:PF10274
Protein Blast
Polymer Type:polypeptide(L)
Molecule:IJ34
Gene (Uniprot):TTHERM_00348390
Chain IDs:L (auth: 0T), IA (auth: 1T), FB (auth: 2T), WB (auth: 3T)
Chain Length:298
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:I7M9T0 Pfam ID:PF14908, PF18289
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 52
Gene (Uniprot):TTHERM_01094880
Chain IDs:M (auth: 0U), JA (auth: 1U), GB (auth: 2U), XB (auth: 3U)
Chain Length:656
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:Q22ZH2 Pfam ID:PF00400
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase delta C4-type zinc-finger protein
Gene (Uniprot):TTHERM_00137550
Chain IDs:N (auth: 0V), KA (auth: 1V), HB (auth: 2V), YB (auth: 3V)
Chain Length:269
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:I7M279 Pfam ID:PF13864
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB43A protein
Gene (Uniprot):TTHERM_00641119
Chain IDs:O (auth: 0X), MA (auth: 1X), JB (auth: 2X), ZB (auth: 3X), GC (auth: 4X)
Chain Length:142
Number of Molecules:5
Biological Source:Tetrahymena thermophila
UniProt ID:A4VDZ5 Pfam ID:PF05914
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB57
Gene (Uniprot):TTHERM_00406590
Chain IDs:Q (auth: 1B), OA (auth: 2B), LB (auth: 3B)
Chain Length:498
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:I7ME23 Pfam ID:PF13499, PF13833
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP182A
Gene (Uniprot):TTHERM_01049330
Chain IDs:U (auth: 1F)
Chain Length:173
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q24BV4 Pfam ID:PF14892
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP143
Gene (Uniprot):TTHERM_00502359
Chain IDs:X (auth: 1I)
Chain Length:263
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:A4VD56
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP21A
Gene (Uniprot):TTHERM_00494280
Chain IDs:Y (auth: 1J)
Chain Length:422
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:I7MLS4
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 53
Gene (Uniprot):TTHERM_01207630
Chain IDs:Z (auth: 1K), WA (auth: 2K)
Chain Length:489
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:Q23YQ8 Pfam ID:PF13868
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP115
Gene (Uniprot):TTHERM_00193760
Chain IDs:AA (auth: 1L), XA (auth: 2L), RB (auth: 3L)
Chain Length:940
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:Q23KF9
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoside diphosphate kinase
Gene (Uniprot):TTHERM_000372529
Chain IDs:BA (auth: 1M), YA (auth: 2M)
Chain Length:372
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:W7XGD1 Pfam ID:PF00334
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cilia- and flagella-associated protein 45
Gene (Uniprot):TTHERM_001164064
Chain IDs:DA (auth: 1O), AB (auth: 2O), SB (auth: 3O)
Chain Length:494
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:W7XCX2 Pfam ID:PF13868
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP210
Gene (Uniprot):TTHERM_00643530
Chain IDs:EA (auth: 1P), BB (auth: 2P)
Chain Length:507
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:Q23EX8 Pfam ID:PF13868
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB72B
Gene (Uniprot):TTHERM_00584850
Chain IDs:GA (auth: 1R), DB (auth: 2R), UB (auth: 3R)
Chain Length:516
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:I7MCU1 Pfam ID:PF06565
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protofilament ribbon protein
Gene (Uniprot):TTHERM_00624660
Chain IDs:LA (auth: 1W), IB (auth: 2W)
Chain Length:280
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:Q240R7 Pfam ID:PF05914
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB35
Gene (Uniprot):TTHERM_00267880
Chain IDs:PA (auth: 2C), MB (auth: 3C), AC (auth: 4C)
Chain Length:300
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:I7ME81 Pfam ID:PF13499
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP182B
Gene (Uniprot):TTHERM_00535210
Chain IDs:SA (auth: 2F)
Chain Length:96
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:I7MLW3 Pfam ID:PF14892
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Flagellar FliJ protein
Gene (Uniprot):TTHERM_00242188
Chain IDs:TA (auth: 2G)
Chain Length:99
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:A4VCU8 Pfam ID:PF15104
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB27B
Gene (Uniprot):TTHERM_01016050
Chain IDs:UA (auth: 2H), PB (auth: 3H), CC (auth: 4H)
Chain Length:229
Number of Molecules:3
Biological Source:Tetrahymena thermophila
UniProt ID:Q22CT6
Protein Blast
Polymer Type:polypeptide(L)
Molecule:STPG2
Gene (Uniprot):TTHERM_00218910
Chain IDs:VA (auth: 2I), QB (auth: 3I)
Chain Length:293
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:I7M2G0 Pfam ID:PF07004
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIB26
Gene (Uniprot):TTHERM_00594110
Chain IDs:NB (auth: 3D)
Chain Length:237
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q232I6 Pfam ID:PF01738
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP129
Gene (Uniprot):TTHERM_00565590
Chain IDs:BC (auth: 4F)
Chain Length:276
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:I7M9I4
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Flagellar microtugule protofilament ribbon protein
Gene (Uniprot):TTHERM_00143690
Chain IDs:EC (auth: 4R), TC (auth: 5R), ZC (auth: 6R), AD (auth: 7R)
Chain Length:613
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:I7M0S7 Pfam ID:PF06565
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Parkin co-regulated protein PACRGB
Gene (Uniprot):TTHERM_00499570
Chain IDs:FC (auth: 4S), UC (auth: 5S)
Chain Length:249
Number of Molecules:2
Biological Source:Tetrahymena thermophila
UniProt ID:I7M317 Pfam ID:PF10274
Protein Blast
Polymer Type:polypeptide(L)
Molecule:OJ2
Gene (Uniprot):TTHERM_00086850
Chain IDs:HC (auth: 5A), IC (auth: 5B), JC (auth: 5C), KC (auth: 5D)
Chain Length:175
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:Q236L2
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CFAP77A
Gene (Uniprot):TTHERM_00974270
Chain IDs:LC (auth: 5E), MC (auth: 5F), NC (auth: 5G), OC (auth: 5H)
Chain Length:247
Number of Molecules:4
Biological Source:Tetrahymena thermophila
UniProt ID:Q22WR6 Pfam ID:PF14825
Polymer Type:polypeptide(L)
Molecule:OJ3
Chain IDs:PC (auth: 5I), QC (auth: 5J), RC (auth: 5K)
Chain Length:168
Number of Molecules:3
Biological Source:Tetrahymena thermophila
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SB1
Gene (Uniprot):TTHERM_00433450
Chain IDs:VC (auth: 6F)
Chain Length:145
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q231B2
Protein Blast
Polymer Type:polypeptide(L)
Molecule:STPG1A
Gene (Uniprot):TTHERM_00724700
Chain IDs:WC (auth: 6G)
Chain Length:364
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q24GM1 Pfam ID:PF07004
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nebulin
Gene (Uniprot):TTHERM_00433410
Chain IDs:XC (auth: 6H)
Chain Length:518
Number of Molecules:1
Biological Source:Tetrahymena thermophila
UniProt ID:Q231B6
Polymer Type:polypeptide(L)
Molecule:B5B6_fMIP
Chain IDs:BD (auth: 8L), CD (auth: 8N)
Chain Length:507
Number of Molecules:2
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:CFAP112A
Chain IDs:DD (auth: 8P)
Chain Length:529
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:B2B3_fMIP
Chain IDs:ED (auth: 8R)
Chain Length:361
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha chain
Chain IDs:FD (auth: AA), HD (auth: AC), JD (auth: AE), LD (auth: AG), ND (auth: AI), PD (auth: AK), RD (auth: AM), TD (auth: BA), VD (auth: BC), XD (auth: BE), ZD (auth: BG), BE (auth: BI), DE (auth: BK), FE (auth: BM), HE (auth: CA), JE (auth: CC), LE (auth: CE), NE (auth: CG), PE (auth: CI), RE (auth: CK), TE (auth: CM), VE (auth: DA), XE (auth: DC), ZE (auth: DE), BF (auth: DG), DF (auth: DI), FF (auth: DK), HF (auth: DM), JF (auth: EA), LF (auth: EC), NF (auth: EE), PF (auth: EG), RF (auth: EI), TF (auth: EK), VF (auth: EM), XF (auth: FA), ZF (auth: FC), BG (auth: FE), DG (auth: FG), FG (auth: FI), HG (auth: FK), JG (auth: FM), LG (auth: GA), NG (auth: GC), PG (auth: GE), RG (auth: GG), TG (auth: GI), VG (auth: GK), XG (auth: GM), ZG (auth: HA), BH (auth: HC), DH (auth: HE), FH (auth: HG), HH (auth: HI), JH (auth: HK), LH (auth: HM), NH (auth: IA), PH (auth: IC), RH (auth: IE), TH (auth: IG), VH (auth: II), XH (auth: IK), ZH (auth: IM), BI (auth: JA), DI (auth: JC), FI (auth: JE), HI (auth: JG), JI, LI (auth: JK), NI (auth: JM), PI (auth: KA), RI (auth: KC), TI (auth: KE), VI (auth: KG), XI (auth: KI), ZI (auth: KK), BJ (auth: KM), DJ (auth: LA), FJ (auth: LC), HJ (auth: LE), JJ (auth: LG), LJ (auth: LI), NJ (auth: LK), PJ (auth: LM), RJ (auth: MA), TJ (auth: MC), VJ (auth: ME), XJ (auth: MG), ZJ (auth: MI), BK (auth: MK), DK (auth: MM), FK (auth: NA), HK (auth: NC), JK (auth: NE), LK (auth: NG), NK (auth: NI), PK (auth: NK), RK (auth: NM), TK (auth: OA), VK (auth: OC), XK (auth: OE), ZK (auth: OG), BL (auth: OI), DL (auth: OK), FL (auth: OM), HL (auth: PA), JL (auth: PC), LL (auth: PE), NL (auth: PG), PL (auth: PI), RL (auth: PK), TL (auth: PM), VL (auth: QA), XL (auth: QC), ZL (auth: QE), BM (auth: QG), DM (auth: QI), FM (auth: QK), HM (auth: QM), JM (auth: RA), LM (auth: RC), NM (auth: RE), PM (auth: RG), RM (auth: RI), TM (auth: RK), VM (auth: RM), XM (auth: SA), ZM (auth: SC), BN (auth: SE), DN (auth: SG), FN (auth: SI), HN (auth: SK), JN (auth: SM), LN (auth: TA), NN (auth: TC), PN (auth: TE), RN (auth: TG), TN (auth: TI), VN (auth: TK), XN (auth: TM), ZN (auth: UA), BO (auth: UC), DO (auth: UE), FO (auth: UG), HO (auth: UI), JO (auth: UK), LO (auth: UM), NO (auth: VA), PO (auth: VC), RO (auth: VE), TO (auth: VG), VO (auth: VI), XO (auth: VK), ZO (auth: VM), BP (auth: WA), DP (auth: WC), FP (auth: WE), HP (auth: WG), JP (auth: WI), LP (auth: WK), NP (auth: WM)
Chain Length:449
Number of Molecules:161
Biological Source:Tetrahymena thermophila
UniProt ID:P41351 Pfam ID:PF00091, PF03953
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):BTU1, BTU2
Chain IDs:GD (auth: AB), ID (auth: AD), KD (auth: AF), MD (auth: AH), OD (auth: AJ), QD (auth: AL), SD (auth: AN), UD (auth: BB), WD (auth: BD), YD (auth: BF), AE (auth: BH), CE (auth: BJ), EE (auth: BL), GE (auth: BN), IE (auth: CB), KE (auth: CD), ME (auth: CF), OE (auth: CH), QE (auth: CJ), SE (auth: CL), UE (auth: CN), WE (auth: DB), YE (auth: DD), AF (auth: DF), CF (auth: DH), EF (auth: DJ), GF (auth: DL), IF (auth: DN), KF (auth: EB), MF (auth: ED), OF (auth: EF), QF (auth: EH), SF (auth: EJ), UF (auth: EL), WF (auth: EN), YF (auth: FB), AG (auth: FD), CG (auth: FF), EG (auth: FH), GG (auth: FJ), IG (auth: FL), KG (auth: FN), MG (auth: GB), OG (auth: GD), QG (auth: GF), SG (auth: GH), UG (auth: GJ), WG (auth: GL), YG (auth: GN), AH (auth: HB), CH (auth: HD), EH (auth: HF), GH (auth: HH), IH (auth: HJ), KH (auth: HL), MH (auth: HN), OH (auth: IB), QH (auth: ID), SH (auth: IF), UH (auth: IH), WH (auth: IJ), YH (auth: IL), AI (auth: IN), CI (auth: JB), EI (auth: JD), GI (auth: JF), II (auth: JH), KI (auth: JJ), MI (auth: JL), OI (auth: JN), QI (auth: KB), SI (auth: KD), UI (auth: KF), WI (auth: KH), YI (auth: KJ), AJ (auth: KL), CJ (auth: KN), EJ (auth: LB), GJ (auth: LD), IJ (auth: LF), KJ (auth: LH), MJ (auth: LJ), OJ (auth: LL), QJ (auth: LN), SJ (auth: MB), UJ (auth: MD), WJ (auth: MF), YJ (auth: MH), AK (auth: MJ), CK (auth: ML), EK (auth: MN), GK (auth: NB), IK (auth: ND), KK (auth: NF), MK (auth: NH), OK (auth: NJ), QK (auth: NL), SK (auth: NN), UK (auth: OB), WK (auth: OD), YK (auth: OF), AL (auth: OH), CL (auth: OJ), EL (auth: OL), GL (auth: ON), IL (auth: PB), KL (auth: PD), ML (auth: PF), OL (auth: PH), QL (auth: PJ), SL (auth: PL), UL (auth: PN), WL (auth: QB), YL (auth: QD), AM (auth: QF), CM (auth: QH), EM (auth: QJ), GM (auth: QL), IM (auth: QN), KM (auth: RB), MM (auth: RD), OM (auth: RF), QM (auth: RH), SM (auth: RJ), UM (auth: RL), WM (auth: RN), YM (auth: SB), AN (auth: SD), CN (auth: SF), EN (auth: SH), GN (auth: SJ), IN (auth: SL), KN (auth: SN), MN (auth: TB), ON (auth: TD), QN (auth: TF), SN (auth: TH), UN (auth: TJ), WN (auth: TL), YN (auth: TN), AO (auth: UB), CO (auth: UD), EO (auth: UF), GO (auth: UH), IO (auth: UJ), KO (auth: UL), MO (auth: UN), OO (auth: VB), QO (auth: VD), SO (auth: VF), UO (auth: VH), WO (auth: VJ), YO (auth: VL), AP (auth: VN), CP (auth: WB), EP (auth: WD), GP (auth: WF), IP (auth: WH), KP (auth: WJ), MP (auth: WL), OP (auth: WN)
Chain Length:443
Number of Molecules:161
Biological Source:Tetrahymena thermophila
UniProt ID:P41352 Pfam ID:PF00091, PF03953
Primary Citation
Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins.
Nat Commun 14 2168 2168 (2023)
PMID: 37061538 DOI: 10.1038/s41467-023-37868-0

Abstact

Cilia are ubiquitous eukaryotic organelles responsible for cellular motility and sensory functions. The ciliary axoneme is a microtubule-based cytoskeleton consisting of two central singlets and nine outer doublet microtubules. Cryo-electron microscopy-based studies have revealed a complex network inside the lumen of both tubules composed of microtubule-inner proteins (MIPs). However, the functions of most MIPs remain unknown. Here, we present single-particle cryo-EM-based analyses of the Tetrahymena thermophila native doublet microtubule and identify 42 MIPs. These data shed light on the evolutionarily conserved and diversified roles of MIPs. In addition, we identified MIPs potentially responsible for the assembly and stability of the doublet outer junction. Knockout of the evolutionarily conserved outer junction component CFAP77 moderately diminishes Tetrahymena swimming speed and beat frequency, indicating the important role of CFAP77 and outer junction stability in cilia beating generation and/or regulation.

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Protein

Chemical

Disease

Primary Citation of related structures
8G2Z