8G1A image
Entry Detail
PDB ID:
8G1A
EMDB ID:
Title:
Cryo-EM structure of Nav1.7 with CBD
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-02-01
Release Date:
2023-07-05
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Sodium channel protein type 9 subunit alpha
Chain IDs:A
Chain Length:1988
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Sodium channel subunit beta-1
Chain IDs:B
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Sodium channel subunit beta-2
Chain IDs:C
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Cannabidiol inhibits Na v channels through two distinct binding sites.
Nat Commun 14 3613 3613 (2023)
PMID: 37330538 DOI: 10.1038/s41467-023-39307-6

Abstact

Cannabidiol (CBD), a major non-psychoactive phytocannabinoid in cannabis, is an effective treatment for some forms of epilepsy and pain. At high concentrations, CBD interacts with a huge variety of proteins, but which targets are most relevant for clinical actions is still unclear. Here we show that CBD interacts with Nav1.7 channels at sub-micromolar concentrations in a state-dependent manner. Electrophysiological experiments show that CBD binds to the inactivated state of Nav1.7 channels with a dissociation constant of about 50 nM. The cryo-EM structure of CBD bound to Nav1.7 channels reveals two distinct binding sites. One is in the IV-I fenestration near the upper pore. The other binding site is directly next to the inactivated "wedged" position of the Ile/Phe/Met (IFM) motif on the short linker between repeats III and IV, which mediates fast inactivation. Consistent with producing a direct stabilization of the inactivated state, mutating residues in this binding site greatly reduced state-dependent binding of CBD. The identification of this binding site may enable design of compounds with improved properties compared to CBD itself.

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