8FVU image
Deposition Date 2023-01-19
Release Date 2024-01-03
Last Version Date 2024-01-31
Entry Detail
PDB ID:
8FVU
Keywords:
Title:
Cryo-EM structure of human Needle/NAIP/NLRC4 (R288A)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Bacillus anthracis (Taxon ID: 1392)
Burkholderia (Taxon ID: 32008)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Baculoviral IAP repeat-containing protein 1
Gene (Uniprot):NAIP
Chain IDs:A
Chain Length:1409
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:NLR family CARD domain-containing protein 4
Gene (Uniprot):NLRC4
Mutations:R288A
Chain IDs:B
Chain Length:1030
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Lethal factor,Type III secretion system protein
Gene (Uniprot):lef, BPSS1548
Chain IDs:C (auth: U)
Chain Length:374
Number of Molecules:1
Biological Source:Bacillus anthracis, Burkholderia
Primary Citation
Structural basis of the human NAIP/NLRC4 inflammasome assembly and pathogen sensing.
Nat.Struct.Mol.Biol. 31 82 91 (2024)
PMID: 38177670 DOI: 10.1038/s41594-023-01143-z

Abstact

The NLR family caspase activation and recruitment domain-containing 4 (NLRC4) inflammasome is a critical cytosolic innate immune machine formed upon the direct sensing of bacterial infection and in response to cell stress during sterile chronic inflammation. Despite its major role in instigating the subsequent host immune response, a more complete understanding of the molecular events in the formation of the NLRC4 inflammasome in humans is lacking. Here we identify Bacillus thailandensis type III secretion system needle protein (Needle) as a potent trigger of the human NLR family apoptosis inhibitory protein (NAIP)/NLRC4 inflammasome complex formation and determine its structural features by cryogenic electron microscopy. We also provide a detailed understanding of how type III secretion system pathogen components are sensed by human NAIP to form a cascade of NLRC4 protomer through a critical lasso-like motif, a 'lock-key' activation model and large structural rearrangement, ultimately forming the full human NLRC4 inflammasome. These results shed light on key regulatory mechanisms specific to the NLRC4 inflammasome assembly, and the innate immune modalities of pathogen sensing in humans.

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