8FVH image
Deposition Date 2023-01-18
Release Date 2023-07-26
Last Version Date 2025-05-14
Entry Detail
PDB ID:
8FVH
Keywords:
Title:
Pseudomonas phage E217 neck (portal, head-to-tail connector, collar and gateway proteins)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E217 collar protein gp28
Gene (Uniprot):vBPaeME217_00028
Chain IDs:A (auth: C), B (auth: A), C (auth: B), D, E, F
Chain Length:123
Number of Molecules:6
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E217 gateway protein gp29
Gene (Uniprot):vBPaeME217_00029
Chain IDs:G (auth: M), H (auth: P), I (auth: S), J (auth: V), K (auth: Y), L (auth: b)
Chain Length:182
Number of Molecules:6
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E217 head-to-tail connector protein gp27
Gene (Uniprot):vBPaeME217_00027
Chain IDs:M (auth: N), N (auth: Q), O (auth: T), P (auth: W), Q (auth: Z), R (auth: c), S (auth: G), T (auth: H), U (auth: I), V (auth: J), W (auth: K), X (auth: L)
Chain Length:123
Number of Molecules:12
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E217 portal protein gp19
Gene (Uniprot):vBPaeME217_00019
Chain IDs:Y (auth: O), Z (auth: R), AA (auth: U), BA (auth: X), CA (auth: a), DA (auth: d), EA (auth: e), FA (auth: f), GA (auth: g), HA (auth: h), IA (auth: i), JA (auth: j)
Chain Length:123
Number of Molecules:12
Biological Source:Pseudomonas phage vB_PaeM_E217
Ligand Molecules
Primary Citation
High-resolution cryo-EM structure of the Pseudomonas bacteriophage E217.
Nat Commun 14 4052 4052 (2023)
PMID: 37422479 DOI: 10.1038/s41467-023-39756-z

Abstact

E217 is a Pseudomonas phage used in an experimental cocktail to eradicate cystic fibrosis-associated Pseudomonas aeruginosa. Here, we describe the structure of the whole E217 virion before and after DNA ejection at 3.1 Å and 4.5 Å resolution, respectively, determined using cryogenic electron microscopy (cryo-EM). We identify and build de novo structures for 19 unique E217 gene products, resolve the tail genome-ejection machine in both extended and contracted states, and decipher the complete architecture of the baseplate formed by 66 polypeptide chains. We also determine that E217 recognizes the host O-antigen as a receptor, and we resolve the N-terminal portion of the O-antigen-binding tail fiber. We propose that E217 design principles presented in this paper are conserved across PB1-like Myoviridae phages of the Pbunavirus genus that encode a ~1.4 MDa baseplate, dramatically smaller than the coliphage T4.

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Primary Citation of related structures