8FRS image
Deposition Date 2023-01-08
Release Date 2023-07-26
Last Version Date 2025-05-14
Entry Detail
PDB ID:
8FRS
Keywords:
Title:
Pseudomonas phage E217 5-fold vertex (capsid and decorating proteins)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.96 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major structural protein
Gene (Uniprot):vBPaeME217_00025
Chain IDs:A (auth: B), B (auth: A), C, D, E, F, J (auth: H), K (auth: G), L (auth: I), M (auth: J), N (auth: K)
Chain Length:317
Number of Molecules:11
Biological Source:Pseudomonas phage vB_PaeM_E217
Polymer Type:polypeptide(L)
Molecule:Structural protein gp24
Gene (Uniprot):vBPaeME217_00024
Chain IDs:G (auth: f), H (auth: g), I (auth: h)
Chain Length:211
Number of Molecules:3
Biological Source:Pseudomonas phage vB_PaeM_E217
Ligand Molecules
Primary Citation
High-resolution cryo-EM structure of the Pseudomonas bacteriophage E217.
Nat Commun 14 4052 4052 (2023)
PMID: 37422479 DOI: 10.1038/s41467-023-39756-z

Abstact

E217 is a Pseudomonas phage used in an experimental cocktail to eradicate cystic fibrosis-associated Pseudomonas aeruginosa. Here, we describe the structure of the whole E217 virion before and after DNA ejection at 3.1 Å and 4.5 Å resolution, respectively, determined using cryogenic electron microscopy (cryo-EM). We identify and build de novo structures for 19 unique E217 gene products, resolve the tail genome-ejection machine in both extended and contracted states, and decipher the complete architecture of the baseplate formed by 66 polypeptide chains. We also determine that E217 recognizes the host O-antigen as a receptor, and we resolve the N-terminal portion of the O-antigen-binding tail fiber. We propose that E217 design principles presented in this paper are conserved across PB1-like Myoviridae phages of the Pbunavirus genus that encode a ~1.4 MDa baseplate, dramatically smaller than the coliphage T4.

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Primary Citation of related structures