8FQL image
Deposition Date 2023-01-06
Release Date 2023-06-28
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8FQL
Keywords:
Title:
Portal vertex of HK97 phage
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Portal protein
Gene (Uniprot):3
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:424
Number of Molecules:12
Biological Source:Escherichia phage HK97
Ligand Molecules
Primary Citation
A symmetry mismatch unraveled: How phage HK97 scaffold flexibly accommodates a 12-fold pore at a 5-fold viral capsid vertex.
Sci Adv 9 eadg8868 eadg8868 (2023)
PMID: 37327331 DOI: 10.1126/sciadv.adg8868

Abstact

Tailed bacteriophages and herpesviruses use a transient scaffold to assemble icosahedral capsids with hexameric capsomers on the faces and pentameric capsomers at all but one vertex where a 12-fold portal is thought to nucleate the assembly. How does the scaffold orchestrate this step? We have determined the portal vertex structure of the bacteriophage HK97 procapsid, where the scaffold is a domain of the major capsid protein. The scaffold forms rigid helix-turn-strand structures on the interior surfaces of all capsomers and is further stabilized around the portal, forming trimeric coiled-coil towers, two per surrounding capsomer. These 10 towers bind identically to 10 of 12 portal subunits, adopting a pseudo-12-fold organization that explains how the symmetry mismatch is managed at this early step.

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Primary Citation of related structures