8FQC image
Deposition Date 2023-01-05
Release Date 2024-01-31
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8FQC
Keywords:
Title:
Structure of baseplate with receptor binding complex of Agrobacterium phage Milano
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Baseplate Central Spike, gp27
Gene (Uniprot):Milano_027
Chain IDs:LA (auth: A)
Chain Length:188
Number of Molecules:1
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Baseplate hub protein, gp26
Gene (Uniprot):Milano_026
Chain IDs:A (auth: C1)
Chain Length:457
Number of Molecules:1
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Tail-tube, gp21
Gene (Uniprot):Milano_021
Chain IDs:B (auth: E1), S (auth: a1), U (auth: f1), V (auth: g1)
Chain Length:136
Number of Molecules:4
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Baseplate Wedge 2 protein, gp29
Gene (Uniprot):Milano_029
Chain IDs:C (auth: F1), D (auth: G1), W (auth: h1), X (auth: i1)
Chain Length:136
Number of Molecules:4
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge 1, gp28
Chain IDs:E (auth: H1), Y (auth: j1)
Chain Length:178
Number of Molecules:2
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Tail sheath protein, gp20
Gene (Uniprot):Milano_020
Chain IDs:F (auth: I1), H (auth: K1), Z (auth: k1), BA (auth: m1)
Chain Length:503
Number of Molecules:4
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Baseplate Wedge 3 protein, gp30
Gene (Uniprot):Milano_030
Chain IDs:G (auth: J1), AA (auth: l1)
Chain Length:286
Number of Molecules:2
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Tail Spike protein, gp124
Gene (Uniprot):Milano_124
Chain IDs:I (auth: P1), J (auth: Q1), K (auth: R1), CA (auth: r1), DA (auth: s1), EA (auth: t1)
Chain Length:587
Number of Molecules:6
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Short Tail Fibers, gp31
Gene (Uniprot):Milano_031
Chain IDs:L (auth: S1), M (auth: T1), O (auth: V1), P (auth: W1), Q (auth: X1), R (auth: Y1), FA (auth: v1), GA (auth: w1), HA (auth: x1), IA (auth: y1), JA (auth: u1), KA (auth: z1)
Chain Length:300
Number of Molecules:12
Biological Source:Agrobacterium phage Milano
Polymer Type:polypeptide(L)
Molecule:Baseplate Centerpiece, gp25
Gene (Uniprot):Milano_025
Chain IDs:N (auth: U1), T (auth: e1)
Chain Length:398
Number of Molecules:2
Biological Source:Agrobacterium phage Milano
Ligand Molecules
Primary Citation
An extensive disulfide bond network prevents tail contraction in Agrobacterium tumefaciens phage Milano.
Nat Commun 15 756 756 (2024)
PMID: 38272938 DOI: 10.1038/s41467-024-44959-z

Abstact

A contractile sheath and rigid tube assembly is a widespread apparatus used by bacteriophages, tailocins, and the bacterial type VI secretion system to penetrate cell membranes. In this mechanism, contraction of an external sheath powers the motion of an inner tube through the membrane. The structure, energetics, and mechanism of the machinery imply rigidity and straightness. The contractile tail of Agrobacterium tumefaciens bacteriophage Milano is flexible and bent to varying degrees, which sets it apart from other contractile tail-like systems. Here, we report structures of the Milano tail including the sheath-tube complex, baseplate, and putative receptor-binding proteins. The flexible-to-rigid transformation of the Milano tail upon contraction can be explained by unique electrostatic properties of the tail tube and sheath. All components of the Milano tail, including sheath subunits, are crosslinked by disulfides, some of which must be reduced for contraction to occur. The putative receptor-binding complex of Milano contains a tailspike, a tail fiber, and at least two small proteins that form a garland around the distal ends of the tailspikes and tail fibers. Despite being flagellotropic, Milano lacks thread-like tail filaments that can wrap around the flagellum, and is thus likely to employ a different binding mechanism.

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Primary Citation of related structures