8FNI image
Deposition Date 2022-12-27
Release Date 2023-07-19
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8FNI
Title:
Cryo-EM structure of RNase-treated RESC-B in trypanosomal RNA editing
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 10 (RESC10)
Gene (Uniprot):Tb07.29K4.480
Chain IDs:H (auth: 10)
Chain Length:543
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 11 (RESC11)
Gene (Uniprot):Tb08.28A12.200
Chain IDs:I (auth: 11)
Chain Length:934
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 13 (RESC13)
Gene (Uniprot):Tb10.406.0050
Chain IDs:J (auth: 13)
Chain Length:320
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 14 (RESC14)
Gene (Uniprot):Tb09.160.5320
Chain IDs:K (auth: 14)
Chain Length:366
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 5 (RESC5)
Gene (Uniprot):Tb10.389.1910
Chain IDs:C (auth: 5)
Chain Length:402
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 6 (RESC6)
Gene (Uniprot):Tb05.26K5.120
Chain IDs:D (auth: 6)
Chain Length:516
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 7 (RESC7)
Gene (Uniprot):Tb11.01.0880
Chain IDs:E (auth: 7)
Chain Length:174
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 8 (RESC8)
Gene (Uniprot):Tb10.6k15.0150
Chain IDs:F (auth: 8)
Chain Length:545
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Molecule:RNA-editing substrate-binding complex protein 9 (RESC9)
Gene (Uniprot):27H14.10
Chain IDs:G (auth: 9)
Chain Length:872
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polyribonucleotide
Molecule:gRNA
Chain IDs:B (auth: g)
Chain Length:16
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:A (auth: m)
Chain Length:21
Number of Molecules:1
Biological Source:Trypanosoma brucei
Ligand Molecules
Primary Citation
Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing.
Science 381 eadg4725 eadg4725 (2023)
PMID: 37410820 DOI: 10.1126/science.adg4725

Abstact

In Trypanosoma brucei, the editosome, composed of RNA-editing substrate-binding complex (RESC) and RNA-editing catalytic complex (RECC), orchestrates guide RNA (gRNA)-programmed editing to recode cryptic mitochondrial transcripts into messenger RNAs (mRNAs). The mechanism of information transfer from gRNA to mRNA is unclear owing to a lack of high-resolution structures for these complexes. With cryo-electron microscopy and functional studies, we have captured gRNA-stabilizing RESC-A and gRNA-mRNA-binding RESC-B and RESC-C particles. RESC-A sequesters gRNA termini, thus promoting hairpin formation and blocking mRNA access. The conversion of RESC-A into RESC-B or -C unfolds gRNA and allows mRNA selection. The ensuing gRNA-mRNA duplex protrudes from RESC-B, likely exposing editing sites to RECC-catalyzed cleavage, uridine insertion or deletion, and ligation. Our work reveals a remodeling event facilitating gRNA-mRNA hybridization and assembly of a macromolecular substrate for the editosome's catalytic modality.

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Primary Citation of related structures