8FLX image
Deposition Date 2022-12-22
Release Date 2023-06-28
Last Version Date 2025-01-01
Entry Detail
PDB ID:
8FLX
Keywords:
Title:
De novo designed homotrimer; the fusion product of BGL17 and DHR59
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.50 Å
R-Value Free:
0.34
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
I 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LK031
Chain IDs:A
Chain Length:352
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Four-component protein nanocages designed by programmed symmetry breaking.
Nature ? ? ? (2024)
PMID: 39695226 DOI: 10.1038/s41586-024-07814-1

Abstact

Four, eight or twenty C3 symmetric protein trimers can be arranged with tetrahedral, octahedral or icosahedral point group symmetry to generate closed cage-like structures1,2. Viruses access more complex higher triangulation number icosahedral architectures by breaking perfect point group symmetry3-9, but nature appears not to have explored similar symmetry breaking for tetrahedral or octahedral symmetries. Here we describe a general design strategy for building higher triangulation number architectures starting from regular polyhedra through pseudosymmetrization of trimeric building blocks. Electron microscopy confirms the structures of T = 4 cages with 48 (tetrahedral), 96 (octahedral) and 240 (icosahedral) subunits, each with 4 distinct chains and 6 different protein-protein interfaces, and diameters of 33 nm, 43 nm and 75 nm, respectively. Higher triangulation number viruses possess very sophisticated functionalities; our general route to higher triangulation number nanocages should similarly enable a next generation of multiple antigen-displaying vaccine candidates10,11 and targeted delivery vehicles12,13.

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Primary Citation of related structures