ISDA

Deposition Date 2022-12-19

Release Date 2023-03-08

Last Version Date 2024-06-19

Entry Detail

PDB ID:

8FJL

Keywords:

VIRUS

Title:

Golden Shiner Reovirus Core Tropical Vertex

Biological Source:

Source Organism:

Golden shiner reovirus (Taxon ID: 185783)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.27 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase VP2
Gene (Uniprot):S2
Chain IDs:A
Chain Length:1273
Number of Molecules:1
Biological Source:Golden shiner reovirus

UniProt ID:Q8JU61 Pfam ID:PF07925

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Microtubule-associated protein VP5
Gene (Uniprot):S5
Chain IDs:B
Chain Length:718
Number of Molecules:1
Biological Source:Golden shiner reovirus

UniProt ID:Q8JU58 Pfam ID:PF07781

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Major inner capsid protein VP3
Gene (Uniprot):S3
Chain IDs:C, D, E, F, G, H, I, J, K, L
Chain Length:1297
Number of Molecules:10
Biological Source:Golden shiner reovirus

UniProt ID:Q8JU60 Pfam ID:PF13912, PF22033

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Major inner capsid protein VP3
Gene (Uniprot):S3
Chain IDs:M, N, KA (auth: k), LA (auth: l), MA (auth: m)
Chain Length:94
Number of Molecules:5
Biological Source:Golden shiner reovirus

UniProt ID:Q8JU60 Pfam ID:PF13912, PF22033

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Clamp protein VP6
Gene (Uniprot):S8
Chain IDs:V, W, X, AA (auth: a), BA (auth: b), DA (auth: d), EA (auth: e), GA (auth: g), HA (auth: h), NA (auth: n)
Chain Length:1273
Number of Molecules:10
Biological Source:Golden shiner reovirus

UniProt ID:Q8JU54 Pfam ID:PF03084

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Outer capsid protein VP1
Gene (Uniprot):S1
Chain IDs:Y, Z, CA (auth: c), FA (auth: f), IA (auth: i)
Chain Length:1297
Number of Molecules:5
Biological Source:Golden shiner reovirus

UniProt ID:Q8JU62 Pfam ID:PF21064, PF21063, PF21065, PF21062, PF21066, PF21060, PF21061, PF06016

Polymer Type:polyribonucleotide
Molecule:RNA (52-MER)
Chain IDs:S (auth: a1), T (auth: b1)
Chain Length:52
Number of Molecules:2
Biological Source:Golden shiner reovirus

Polymer Type:polyribonucleotide
Molecule:RNA (60-MER)
Chain IDs:OA (auth: a2), PA (auth: b2)
Chain Length:60
Number of Molecules:2
Biological Source:Golden shiner reovirus

Polymer Type:polyribonucleotide
Molecule:RNA (39-MER)
Chain IDs:U (auth: a3), JA (auth: b3)
Chain Length:40
Number of Molecules:2
Biological Source:Golden shiner reovirus

Polymer Type:polyribonucleotide
Molecule:RNA (38-MER)
Chain IDs:O (auth: a5), P (auth: b5)
Chain Length:28
Number of Molecules:2
Biological Source:Golden shiner reovirus

Polymer Type:polyribonucleotide
Molecule:RNA (30-MER)
Chain IDs:Q (auth: b6), R (auth: a6)
Chain Length:38
Number of Molecules:2
Biological Source:Golden shiner reovirus

Ligand Molecules

Primary Citation

Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation.

Stevens, A, Cui, Y, Shivakoti, S, Zhou, Z.H.Show

Protein Cell 14 544 548 (2023)

PMID: 36856784 DOI: 10.1093/procel/pwad002

Primary Citation of related structures