8FG1 image
Deposition Date 2022-12-12
Release Date 2023-10-25
Last Version Date 2024-05-15
Entry Detail
PDB ID:
8FG1
Keywords:
Title:
Human diaphanous inhibitory domain bound to diaphanous autoregulatory domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein diaphanous homolog 1
Gene (Uniprot):DIAPH1
Chain IDs:A
Chain Length:256
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Protein diaphanous homolog 1
Gene (Uniprot):DIAPH1
Mutations:M1199L
Chain IDs:B
Chain Length:29
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Disruption of the productive encounter complex results in dysregulation of DIAPH1 activity.
J.Biol.Chem. 299 105342 105342 (2023)
PMID: 37832872 DOI: 10.1016/j.jbc.2023.105342

Abstact

The diaphanous-related formin, Diaphanous 1 (DIAPH1), is required for the assembly of Filamentous (F)-actin structures. DIAPH1 is an intracellular effector of the receptor for advanced glycation end products (RAGE) and contributes to RAGE signaling and effects such as increased cell migration upon RAGE stimulation. Mutations in DIAPH1, including those in the basic "RRKR" motif of its autoregulatory domain, diaphanous autoinhibitory domain (DAD), are implicated in hearing loss, macrothrombocytopenia, and cardiovascular diseases. The solution structure of the complex between the N-terminal inhibitory domain, DID, and the C-terminal DAD, resolved by NMR spectroscopy shows only transient interactions between DID and the basic motif of DAD, resembling those found in encounter complexes. Cross-linking studies placed the RRKR motif into the negatively charged cavity of DID. Neutralizing the cavity resulted in a 5-fold decrease in the binding affinity and 4-fold decrease in the association rate constant of DAD for DID, indicating that the RRKR interactions with DID form a productive encounter complex. A DIAPH1 mutant containing a neutralized RRKR binding cavity shows excessive colocalization with actin and is unresponsive to RAGE stimulation. This is the first demonstration of a specific alteration of the surfaces responsible for productive encounter complexation with implications for human pathology.

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Primary Citation of related structures