8FDU image
Entry Detail
PDB ID:
8FDU
EMDB ID:
Keywords:
Title:
Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex in the buffer containing ATP-Vi (local refined on AAA3-AAA5 and LIS1)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-12-04
Release Date:
2023-06-21
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase
Chain IDs:A
Chain Length:3126
Number of Molecules:1
Biological Source:Homo sapiens, Thermus thermophilus
Polymer Type:polypeptide(L)
Description:Platelet-activating factor acetylhydrolase IB subunit beta,Platelet-activating factor acetylhydrolase IB subunit beta,human LIS1 protein with a SNAP tag
Chain IDs:B, C
Chain Length:598
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Microtubule-binding-induced allostery triggers LIS1 dissociation from dynein prior to cargo transport.
Nat.Struct.Mol.Biol. 30 1365 1379 (2023)
PMID: 37322240 DOI: 10.1038/s41594-023-01010-x

Abstact

The lissencephaly-related protein LIS1 is a critical regulator of cytoplasmic dynein that governs motor function and intracellular localization (for example, to microtubule plus-ends). Although LIS1 binding is required for dynein activity, its unbinding prior to initiation of cargo transport is equally important, since preventing dissociation leads to dynein dysfunction. To understand whether and how dynein-LIS1 binding is modulated, we engineered dynein mutants locked in a microtubule-bound (MT-B) or microtubule-unbound (MT-U) state. Whereas the MT-B mutant exhibits low LIS1 affinity, the MT-U mutant binds LIS1 with high affinity, and as a consequence remains almost irreversibly associated with microtubule plus-ends. We find that a monomeric motor domain is sufficient to exhibit these opposing LIS1 affinities, and that this is evolutionarily conserved between yeast and humans. Three cryo-EM structures of human dynein with and without LIS1 reveal microtubule-binding induced conformational changes responsible for this regulation. Our work reveals key biochemical and structural insight into LIS1-mediated dynein activation.

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