8FCE image
Entry Detail
PDB ID:
8FCE
Keywords:
Title:
HIV-1 Reverse Transcriptase in complex with 7-membered bicyclic core NNRTI
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-12-01
Release Date:
2023-02-01
Method Details:
Experimental Method:
Resolution:
2.77 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:p66 RT
Chain IDs:A
Chain Length:560
Number of Molecules:1
Biological Source:HIV whole-genome vector AA1305#18
Polymer Type:polypeptide(L)
Description:p51 RT
Chain IDs:B
Chain Length:440
Number of Molecules:1
Biological Source:HIV whole-genome vector AA1305#18
Primary Citation
Design and Synthesis of Novel HIV-1 NNRTIs with Bicyclic Cores and with Improved Physicochemical Properties.
J.Med.Chem. 66 1761 1777 (2023)
PMID: 36652602 DOI: 10.1021/acs.jmedchem.2c01574

Abstact

Non-nucleoside reverse transcriptase inhibitors (NNRTIs) represent cornerstones of current regimens for treatment of human immunodeficiency virus type 1 (HIV-1) infections. However, NNRTIs usually suffer from low aqueous solubility and the emergence of resistant viral strains. In the present work, novel bicyclic NNRTIs derived from etravirine (ETV) and rilpivirine (RPV), bearing modified purine, tetrahydropteridine, and pyrimidodiazepine cores, were designed and prepared. Compounds 2, 4, and 6 carrying the acrylonitrile moiety displayed single-digit nanomolar activities against the wild-type (WT) virus (EC50 = 2.5, 2.7, and 3.0 nM, respectively), where the low nanomolar activity was retained against HXB2 (EC50 = 2.2-2.8 nM) and the K103N and Y181C mutated strains (fold change, 1.2-6.7×). Most importantly, compound 2 exhibited significantly improved phosphate-buffered saline solubility (10.4 μM) compared to ETV and RPV (≪1 μM). Additionally, the binding modes of compounds 2, 4, and 6 to the reverse transcriptase were studied by X-ray crystallography.

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