8FB0 image
Entry Detail
PDB ID:
8FB0
Keywords:
Title:
H64Q Myoglobin in complex with acetamide
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-11-29
Release Date:
2023-06-21
Method Details:
Experimental Method:
Resolution:
1.76 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 6
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Myoglobin
Mutations:H64Q
Chain IDs:A
Chain Length:154
Number of Molecules:1
Biological Source:Physeter catodon
Primary Citation
Interactions of metronidazole and chloramphenicol with myoglobin: Crystal structure of a Mb-acetamide product.
J Porphyr Phthalocyanines 27 1142 1147 (2023)
PMID: 37868702 DOI: 10.1142/s1088424623500700

Abstact

Nitroorganics present a general concern for a safe environment due to their health hazards. However, some nitroorganics such as metronidazole (Mtz) and chloramphenicol (CAM) also possess medicinal value. Mtz and CAM can undergo reductive bioactivation presumably via their nitroso derivatives. We show, using UV-vis spectroscopy, that sperm whale myoglobin (swMb) and its distal pocket mutants retaining H-bonding capacity react with Mtz in the presence of dithionite to generate products with spectra suggestive of the Fe-bound nitroso (Fe-RNO; λmax ~420 nm) forms. We have crystallized and solved the X-ray crystal structure of an H64Q swMb-acetamide compound to 1.76 Å resolution; formation of this compound results from the serendipitous crystallographic trapping, by the heme center, of acetamide from the reductive decomposition of Mtz. Only one of the swMb proteins, namely H64Q swMb with a relatively flexible Gln64 residue, reacted with CAM presumably due to the bulky nature of CAM that generally may restrict its access to the heme site.

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