8F7Z image
Deposition Date 2022-11-21
Release Date 2023-11-01
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8F7Z
Keywords:
Title:
VRC34.01_mm28 bound to fusion peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VRC34_mm28 Heavy Chain
Chain IDs:B (auth: E), D (auth: A), E (auth: C), F (auth: G)
Chain Length:234
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:VRC34_m228 Light Chain
Chain IDs:C (auth: F), G (auth: B), H (auth: D), I (auth: H)
Chain Length:214
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HIV-1 Env Fusion Peptide
Chain IDs:A (auth: I), J (auth: K), K (auth: L), L (auth: M)
Chain Length:8
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Primary Citation
Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site.
Nat Commun 14 7593 7593 (2023)
PMID: 37989731 DOI: 10.1038/s41467-023-42098-5

Abstact

The HIV-1 fusion peptide (FP) represents a promising vaccine target, but global FP sequence diversity among circulating strains has limited anti-FP antibodies to ~60% neutralization breadth. Here we evolve the FP-targeting antibody VRC34.01 in vitro to enhance FP-neutralization using site saturation mutagenesis and yeast display. Successive rounds of directed evolution by iterative selection of antibodies for binding to resistant HIV-1 strains establish a variant, VRC34.01_mm28, as a best-in-class antibody with 10-fold enhanced potency compared to the template antibody and ~80% breadth on a cross-clade 208-strain neutralization panel. Structural analyses demonstrate that the improved paratope expands the FP binding groove to accommodate diverse FP sequences of different lengths while also recognizing the HIV-1 Env backbone. These data reveal critical antibody features for enhanced neutralization breadth and potency against the FP site of vulnerability and accelerate clinical development of broad HIV-1 FP-targeting vaccines and therapeutics.

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Primary Citation of related structures
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