8F6Q image
Entry Detail
PDB ID:
8F6Q
EMDB ID:
Keywords:
Title:
CryoEM structure of designed modular protein oligomer C8-71
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-11-17
Release Date:
2023-11-29
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C8-71
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:213
Number of Molecules:8
Biological Source:synthetic construct
Ligand Molecules
Primary Citation

Abstact

Many growth factors and cytokines signal by binding to the extracellular domains of their receptors and driving association and transphosphorylation of the receptor intracellular tyrosine kinase domains, initiating downstream signaling cascades. To enable systematic exploration of how receptor valency and geometry affect signaling outcomes, we designed cyclic homo-oligomers with up to 8 subunits using repeat protein building blocks that can be modularly extended. By incorporating a de novo-designed fibroblast growth factor receptor (FGFR)-binding module into these scaffolds, we generated a series of synthetic signaling ligands that exhibit potent valency- and geometry-dependent Ca2+ release and mitogen-activated protein kinase (MAPK) pathway activation. The high specificity of the designed agonists reveals distinct roles for two FGFR splice variants in driving arterial endothelium and perivascular cell fates during early vascular development. Our designed modular assemblies should be broadly useful for unraveling the complexities of signaling in key developmental transitions and for developing future therapeutic applications.

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Primary Citation of related structures