8F4P image
Deposition Date 2022-11-11
Release Date 2023-11-15
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8F4P
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
SARS-CoV-2 spike protein trimer (down conformation) bound with a nanobody
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Lama glama (Taxon ID: 9844)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8F4P validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A, B, C
Chain Length:1136
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Polymer Type:polypeptide(L)
Molecule:Anti-S1 Nanobody
Chain IDs:D
Chain Length:118
Number of Molecules:1
Biological Source:Lama glama
Ligand Molecules
NAG
Primary Citation
SARS-CoV-2 spike protein (down conformation) bound with a nanobody
To Be Published ? ? ? (?)
Primary Citation of related structures
8F4P