8F2B image
Entry Detail
PDB ID:
8F2B
EMDB ID:
Title:
Amylin 3 Receptor in complex with Gs and Pramlintide analogue peptide San45
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-11-07
Release Date:
2023-08-02
Method Details:
Experimental Method:
Resolution:
2.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
Mutations:S54N, G226A, E268A, A366S, N271K, K274D, R280K, T284D, I285T
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Chain IDs:B
Chain Length:350
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Receptor activity-modifying protein 3
Chain IDs:E
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Chain IDs:C (auth: G)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:nanobody 35
Chain IDs:D (auth: N)
Chain Length:138
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Description:pramlintide analogue San45
Chain IDs:F (auth: P)
Chain Length:38
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Calcitonin receptor
Chain IDs:G (auth: R)
Chain Length:501
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural insight into selectivity of amylin and calcitonin receptor agonists.
Nat.Chem.Biol. 20 162 169 (2024)
PMID: 37537379 DOI: 10.1038/s41589-023-01393-4

Abstact

Amylin receptors (AMYRs), heterodimers of the calcitonin receptor (CTR) and one of three receptor activity-modifying proteins, are promising obesity targets. A hallmark of AMYR activation by Amy is the formation of a 'bypass' secondary structural motif (residues S19-P25). This study explored potential tuning of peptide selectivity through modification to residues 19-22, resulting in a selective AMYR agonist, San385, as well as nonselective dual amylin and calcitonin receptor agonists (DACRAs), with San45 being an exemplar. We determined the structure and dynamics of San385-bound AMY3R, and San45 bound to AMY3R or CTR. San45, via its conjugated lipid at position 21, was anchored at the edge of the receptor bundle, enabling a stable, alternative binding mode when bound to the CTR, in addition to the bypass mode of binding to AMY3R. Targeted lipid modification may provide a single intervention strategy for design of long-acting, nonselective, Amy-based DACRAs with potential anti-obesity effects.

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