8F0L image
Deposition Date 2022-11-03
Release Date 2023-03-29
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8F0L
Keywords:
Title:
Crystal Structure of the Human T cell Receptor CD3(EPSILON) N-Terminal Peptide Complexed with ADI-26906 FAB
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.19
R-Value Work:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ADI-26906 Fab Heavy Chain
Chain IDs:A (auth: H), C (auth: A)
Chain Length:223
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ADI-26906 Fab Light Chain
Chain IDs:B (auth: L), D (auth: B)
Chain Length:219
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD3 epsilon chain
Gene (Uniprot):CD3E
Chain IDs:E (auth: P), F (auth: Q)
Chain Length:13
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA E GLN modified residue
Ligand Molecules
Primary Citation
Structure-based engineering of a novel CD3 epsilon-targeting antibody for reduced polyreactivity.
Mabs 15 2189974 2189974 (2023)
PMID: 36991534 DOI: 10.1080/19420862.2023.2189974

Abstact

Bispecific antibodies continue to represent a growth area for antibody therapeutics, with roughly a third of molecules in clinical development being T-cell engagers that use an anti-CD3 binding arm. CD3 antibodies possessing cross-reactivity with cynomolgus monkey typically recognize a highly electronegative linear epitope at the extreme N-terminus of CD3 epsilon (CD3ε). Such antibodies have high isoelectric points and display problematic polyreactivity (correlated with poor pharmacokinetics for monospecific antibodies). Using insights from the crystal structure of anti-Hu/Cy CD3 antibody ADI-26906 in complex with CD3ε and antibody engineering using a yeast-based platform, we have derived high-affinity CD3 antibody variants with very low polyreactivity and significantly improved biophysical developability. Comparison of these variants with CD3 antibodies in the clinic (as part of bi- or multi-specifics) shows that affinity for CD3 is correlated with polyreactivity. Our engineered CD3 antibodies break this correlation, forming a broad affinity range with no to low polyreactivity. Such antibodies will enable bispecifics with improved pharmacokinetic and safety profiles and suggest engineering solutions that will benefit the large and growing sector of T-cell engagers.

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Primary Citation of related structures