ISDA

Deposition Date 2022-10-20

Release Date 2023-11-01

Last Version Date 2024-11-06

Entry Detail

PDB ID:

8EVG

Keywords:

TRANSCRIPTION/DNA

Title:

162bp CX3CR1 nucleosome (further classified with better nucleosome end)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Mus musculus (Taxon ID: 10090)

Host Organism:

Escherichia coli 'BL21-Gold(DE3)pLysS AG'

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.75 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 2-C
Gene (Uniprot):H2AC20
Chain IDs:C, G
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q16777 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 2-E
Gene (Uniprot):H2BC21
Chain IDs:D, H
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q16778 Pfam ID:PF00125

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (162-MER)
Chain IDs:I
Chain Length:162
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (162-MER)
Chain IDs:J
Chain Length:162
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Single-chain variable fragment
Chain IDs:K (auth: M), L (auth: N)
Chain Length:265
Number of Molecules:2
Biological Source:Escherichia coli

Ligand Molecules

Primary Citation

Structural basis of cooperative targeting of the CX3CR1 nucleosome

Tengfei, L, Ruifang, G, Yawen, B.Show

To Be Published ? ? ? (?)

Primary Citation of related structures