8EUW image
Entry Detail
PDB ID:
8EUW
EMDB ID:
Title:
Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01-MM28 FAB
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-10-19
Release Date:
2023-09-27
Method Details:
Experimental Method:
Resolution:
2.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp120
Chain IDs:A, C, E
Chain Length:481
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp41
Chain IDs:B, D, F
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:VRC34.01-MM28 FAB variable heavy chain
Chain IDs:G, I, K
Chain Length:223
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC34.01-MM28 FAB variable light chain
Chain IDs:H, J, L
Chain Length:212
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site.
Nat Commun 14 7593 7593 (2023)
PMID: 37989731 DOI: 10.1038/s41467-023-42098-5

Abstact

The HIV-1 fusion peptide (FP) represents a promising vaccine target, but global FP sequence diversity among circulating strains has limited anti-FP antibodies to ~60% neutralization breadth. Here we evolve the FP-targeting antibody VRC34.01 in vitro to enhance FP-neutralization using site saturation mutagenesis and yeast display. Successive rounds of directed evolution by iterative selection of antibodies for binding to resistant HIV-1 strains establish a variant, VRC34.01_mm28, as a best-in-class antibody with 10-fold enhanced potency compared to the template antibody and ~80% breadth on a cross-clade 208-strain neutralization panel. Structural analyses demonstrate that the improved paratope expands the FP binding groove to accommodate diverse FP sequences of different lengths while also recognizing the HIV-1 Env backbone. These data reveal critical antibody features for enhanced neutralization breadth and potency against the FP site of vulnerability and accelerate clinical development of broad HIV-1 FP-targeting vaccines and therapeutics.

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Primary Citation of related structures