8EQF image
Deposition Date 2022-10-07
Release Date 2023-10-11
Last Version Date 2025-05-21
Entry Detail
PDB ID:
8EQF
Keywords:
Title:
cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.16 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A
Chain Length:194
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:Fab heavy chain
Chain IDs:B (auth: H)
Chain Length:123
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab light chain
Chain IDs:C (auth: L)
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An in vitro experimental pipeline to characterize the epitope of a SARS-CoV-2 neutralizing antibody.
Mbio 15 e0247723 e0247723 (2024)
PMID: 38054729 DOI: 10.1128/mbio.02477-23

Abstact

The COVID-19 pandemic remains a significant public health concern for the global population; the development and characterization of therapeutics, especially ones that are broadly effective, will continue to be essential as severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) variants emerge. Neutralizing monoclonal antibodies remain an effective therapeutic strategy to prevent virus infection and spread so long as they recognize and interact with circulating variants. The epitope and binding specificity of a neutralizing anti-SARS-CoV-2 Spike receptor-binding domain antibody clone against many SARS-CoV-2 variants of concern were characterized by generating antibody-resistant virions coupled with cryo-EM structural analysis and VSV-spike neutralization studies. This workflow can serve to predict the efficacy of antibody therapeutics against emerging variants and inform the design of therapeutics and vaccines.

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Protein

Chemical

Disease

Primary Citation of related structures