8EQ6 image
Entry Detail
PDB ID:
8EQ6
Title:
PD1 signaling receptor bound to FAB Complex
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-10-07
Release Date:
2023-10-11
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.25
R-Value Work:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death protein 1
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Antibody FAB heavy chain
Chain IDs:C (auth: H)
Chain Length:227
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Antibody FAB light chain
Chain IDs:B (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation

Abstact

Antibodies can block immune receptor engagement or trigger the receptor machinery to initiate signaling. We hypothesized that antibody agonists trigger signaling by sterically excluding large receptor-type protein tyrosine phosphatases (RPTPs) such as CD45 from sites of receptor engagement. An agonist targeting the costimulatory receptor CD28 produced signals that depended on antibody immobilization and were sensitive to the sizes of the receptor, the RPTPs, and the antibody itself. Although both the agonist and a non-agonistic anti-CD28 antibody locally excluded CD45, the agonistic antibody was more effective. An anti-PD-1 antibody that bound membrane proximally excluded CD45, triggered Src homology 2 domain-containing phosphatase 2 recruitment, and suppressed systemic lupus erythematosus and delayed-type hypersensitivity in experimental models. Paradoxically, nivolumab and pembrolizumab, anti-PD-1-blocking antibodies used clinically, also excluded CD45 and were agonistic in certain settings. Reducing these agonistic effects using antibody engineering improved PD-1 blockade. These findings establish a framework for developing new and improved therapies for autoimmunity and cancer.

Legend

Protein

Chemical

Disease

Primary Citation of related structures