8EON image
Deposition Date 2022-10-03
Release Date 2023-07-26
Last Version Date 2025-06-04
Entry Detail
PDB ID:
8EON
Keywords:
Title:
Pseudomonas phage E217 baseplate complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate component gp37
Gene (Uniprot):vBPaeME217_00037
Chain IDs:EA (auth: A), FA (auth: B), GA (auth: C)
Chain Length:172
Number of Molecules:3
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate component gp38
Gene (Uniprot):vBPaeME217_00038
Chain IDs:HA (auth: D), KA (auth: k), OA (auth: o)
Chain Length:193
Number of Molecules:3
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate hub gp41
Gene (Uniprot):vBPaeME217_00041
Chain IDs:IA (auth: E), LA (auth: l), MA (auth: m)
Chain Length:500
Number of Molecules:3
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate spike gp43
Gene (Uniprot):vBPaeME217_00043
Chain IDs:JA (auth: F), NA (auth: n), PA (auth: p)
Chain Length:102
Number of Molecules:3
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate component gp33
Gene (Uniprot):Epa11_00009
Chain IDs:A (auth: G), F (auth: L), K (auth: Q), P (auth: V), U (auth: a), Z (auth: f)
Chain Length:172
Number of Molecules:6
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate component gp34
Gene (Uniprot):Epa11_00010
Chain IDs:B (auth: H), G (auth: M), L (auth: R), Q (auth: W), V (auth: b), AA (auth: g)
Chain Length:172
Number of Molecules:6
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate component gp36
Gene (Uniprot):PA1P1_053
Chain IDs:C (auth: I), H (auth: N), M (auth: S), R (auth: X), W (auth: c), BA (auth: h)
Chain Length:152
Number of Molecules:6
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Triplex gp44-b
Gene (Uniprot):vBPaeME217_00044
Chain IDs:D (auth: J), I (auth: O), N (auth: T), S (auth: Y), X (auth: d), CA (auth: i), QA (auth: q), RA (auth: r), SA (auth: s), TA (auth: t), UA (auth: u), VA (auth: v)
Chain Length:193
Number of Molecules:12
Biological Source:Pseudomonas phage vB_PaeM_E217
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Triplex gp45
Gene (Uniprot):S1_046
Chain IDs:E (auth: K), J (auth: P), O (auth: U), T (auth: Z), Y (auth: e), DA (auth: j)
Chain Length:500
Number of Molecules:6
Biological Source:Pseudomonas phage vB_PaeM_E217
Ligand Molecules
Primary Citation
High-resolution cryo-EM structure of the Pseudomonas bacteriophage E217.
Nat Commun 14 4052 4052 (2023)
PMID: 37422479 DOI: 10.1038/s41467-023-39756-z

Abstact

E217 is a Pseudomonas phage used in an experimental cocktail to eradicate cystic fibrosis-associated Pseudomonas aeruginosa. Here, we describe the structure of the whole E217 virion before and after DNA ejection at 3.1 Å and 4.5 Å resolution, respectively, determined using cryogenic electron microscopy (cryo-EM). We identify and build de novo structures for 19 unique E217 gene products, resolve the tail genome-ejection machine in both extended and contracted states, and decipher the complete architecture of the baseplate formed by 66 polypeptide chains. We also determine that E217 recognizes the host O-antigen as a receptor, and we resolve the N-terminal portion of the O-antigen-binding tail fiber. We propose that E217 design principles presented in this paper are conserved across PB1-like Myoviridae phages of the Pbunavirus genus that encode a ~1.4 MDa baseplate, dramatically smaller than the coliphage T4.

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Primary Citation of related structures