8ENT image
Deposition Date 2022-09-30
Release Date 2023-06-28
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8ENT
Title:
Interleukin-21 signaling complex with IL-21R and IL-2Rg
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.83 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Interleukin-21
Gene (Uniprot):IL21
Mutations:N68Q
Chain IDs:A, D, G, J
Chain Length:144
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Interleukin-21 receptor
Gene (Uniprot):IL21R
Mutations:N78Q, N85Q, N106D, N116Q
Chain IDs:B, E, H, K
Chain Length:237
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cytokine receptor common subunit gamma
Gene (Uniprot):IL2RG
Mutations:N53Q
Chain IDs:C, F, I
Chain Length:207
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
A structural blueprint for interleukin-21 signal modulation.
Cell Rep 42 112657 112657 (2023)
PMID: 37339051 DOI: 10.1016/j.celrep.2023.112657

Abstact

Interleukin-21 (IL-21) plays a critical role in generating immunological memory by promoting the germinal center reaction, yet clinical use of IL-21 remains challenging because of its pleiotropy and association with autoimmune disease. To better understand the structural basis of IL-21 signaling, we determine the structure of the IL-21-IL-21R-γc ternary signaling complex by X-ray crystallography and a structure of a dimer of trimeric complexes using cryo-electron microscopy. Guided by the structure, we design analogs of IL-21 by introducing substitutions to the IL-21-γc interface. These IL-21 analogs act as partial agonists that modulate downstream activation of pS6, pSTAT3, and pSTAT1. These analogs exhibit differential activity on T and B cell subsets and modulate antibody production in human tonsil organoids. These results clarify the structural basis of IL-21 signaling and offer a potential strategy for tunable manipulation of humoral immunity.

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