8ELI image
Entry Detail
PDB ID:
8ELI
Keywords:
Title:
Broadly neutralizing antibody VRC34-combo.1 in complex with HIV fusion peptide (residue 512-519)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-09-24
Release Date:
2023-09-27
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.17
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fusion peptide
Chain IDs:C (auth: A)
Chain Length:8
Number of Molecules:1
Biological Source:HIV-1 06TG.HT008
Polymer Type:polypeptide(L)
Description:VRC34-combo.1 Fab Heavy chain
Chain IDs:B (auth: H)
Chain Length:226
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC34-combo.1 Fab Light chain
Chain IDs:A (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site.
Nat Commun 14 7593 7593 (2023)
PMID: 37989731 DOI: 10.1038/s41467-023-42098-5

Abstact

The HIV-1 fusion peptide (FP) represents a promising vaccine target, but global FP sequence diversity among circulating strains has limited anti-FP antibodies to ~60% neutralization breadth. Here we evolve the FP-targeting antibody VRC34.01 in vitro to enhance FP-neutralization using site saturation mutagenesis and yeast display. Successive rounds of directed evolution by iterative selection of antibodies for binding to resistant HIV-1 strains establish a variant, VRC34.01_mm28, as a best-in-class antibody with 10-fold enhanced potency compared to the template antibody and ~80% breadth on a cross-clade 208-strain neutralization panel. Structural analyses demonstrate that the improved paratope expands the FP binding groove to accommodate diverse FP sequences of different lengths while also recognizing the HIV-1 Env backbone. These data reveal critical antibody features for enhanced neutralization breadth and potency against the FP site of vulnerability and accelerate clinical development of broad HIV-1 FP-targeting vaccines and therapeutics.

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