8EKO image
Entry Detail
PDB ID:
8EKO
Keywords:
Title:
Sperm whale myoglobin mutant L29H F33W F43H (F33W CuBMb)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-09-21
Release Date:
2022-10-26
Method Details:
Experimental Method:
Resolution:
1.34 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Myoglobin
Mutations:L29H, F33W, F43H
Chain IDs:A
Chain Length:153
Number of Molecules:1
Biological Source:Physeter catodon
Ligand Molecules
Primary Citation
Tryptophan Can Promote Oxygen Reduction to Water in a Biosynthetic Model of Heme Copper Oxidases.
Biochemistry 62 388 395 (2023)
PMID: 36215733 DOI: 10.1021/acs.biochem.2c00300

Abstact

Heme-copper oxidases (HCOs) utilize tyrosine (Tyr) to donate one of the four electrons required for the reduction of O2 to water in biological respiration, while tryptophan (Trp) is speculated to fulfill the same role in cyt bd oxidases. We previously engineered myoglobin into a biosynthetic model of HCOs and demonstrated the critical role that Tyr serves in the oxygen reduction reaction (ORR). To address the roles of Tyr and Trp in these oxidases, we herein report the preparation of the same biosynthetic model with the Tyr replaced by Trp and further demonstrate that Trp can also promote the ORR, albeit with lower activity. An X-ray crystal structure of the Trp variant shows a hydrogen-bonding network involving two water molecules that are organized by Trp, similar to that in the Tyr variant, which is absent in the crystal structure with the native Phe residue. Additional electron paramagnetic resonance measurements are consistent with the formation of a Trp radical species upon reacting with H2O2. We attribute the lower activity of the Trp variant to Trp's higher reduction potential relative to Tyr. Together, these findings demonstrate, for the first time, that Trp can indeed promote the ORR and provides a structural basis for the observation of varying activities. The results support a redox role for the conserved Trp in bd oxidase while suggesting that HCOs use Tyr instead of Trp to achieve higher reactivity.

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Primary Citation of related structures