8EJL image
Deposition Date 2022-09-17
Release Date 2023-02-15
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8EJL
Keywords:
Title:
Structure of HIV-1 capsid declination in complex with CPSF6-FG peptide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HIV-1 capsid protein
Gene (Uniprot):gag
Chain IDs:A (auth: L), B (auth: M), C (auth: N), F (auth: A)
Chain Length:231
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cleavage and polyadenylation specificity factor subunit 6
Gene (Uniprot):CPSF6
Chain IDs:D (auth: Y), E (auth: Z)
Chain Length:17
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A molecular switch modulates assembly and host factor binding of the HIV-1 capsid.
Nat.Struct.Mol.Biol. 30 383 390 (2023)
PMID: 36759579 DOI: 10.1038/s41594-022-00913-5

Abstact

The HIV-1 capsid is a fullerene cone made of quasi-equivalent hexamers and pentamers of the viral CA protein. Typically, quasi-equivalent assembly of viral capsid subunits is controlled by a molecular switch. Here, we identify a Thr-Val-Gly-Gly motif that modulates CA hexamer/pentamer switching by folding into a 310 helix in the pentamer and random coil in the hexamer. Manipulating the coil/helix configuration of the motif allowed us to control pentamer and hexamer formation in a predictable manner, thus proving its function as a molecular switch. Importantly, the switch also remodels the common binding site for host factors that are critical for viral replication and the new ultra-potent HIV-1 inhibitor lenacapavir. This study reveals that a critical assembly element also modulates the post-assembly and viral replication functions of the HIV-1 capsid and provides new insights on capsid function and inhibition.

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