8EFT image
Entry Detail
PDB ID:
8EFT
EMDB ID:
Title:
CryoEM of the soluble OPA1 interfaces from the apo helical assembly on a lipid membrane
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-09-09
Release Date:
2023-06-28
Method Details:
Experimental Method:
Resolution:
9.68 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Dynamin-like 120 kDa protein, form S1
Chain IDs:A, B, C, D (auth: K), E (auth: D), F (auth: L), G (auth: E), H (auth: M), I (auth: F), J (auth: N), K (auth: G), L (auth: O), M (auth: H), N (auth: P), O (auth: I), P (auth: Q), Q (auth: J), R
Chain Length:766
Number of Molecules:18
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
OPA1 helical structures give perspective to mitochondrial dysfunction.
Nature 620 1109 1116 (2023)
PMID: 37612506 DOI: 10.1038/s41586-023-06462-1

Abstact

Dominant optic atrophy is one of the leading causes of childhood blindness. Around 60-80% of cases1 are caused by mutations of the gene that encodes optic atrophy protein 1 (OPA1), a protein that has a key role in inner mitochondrial membrane fusion and remodelling of cristae and is crucial for the dynamic organization and regulation of mitochondria2. Mutations in OPA1 result in the dysregulation of the GTPase-mediated fusion process of the mitochondrial inner and outer membranes3. Here we used cryo-electron microscopy methods to solve helical structures of OPA1 assembled on lipid membrane tubes, in the presence and absence of nucleotide. These helical assemblies organize into densely packed protein rungs with minimal inter-rung connectivity, and exhibit nucleotide-dependent dimerization of the GTPase domains-a hallmark of the dynamin superfamily of proteins4. OPA1 also contains several unique secondary structures in the paddle domain that strengthen its membrane association, including membrane-inserting helices. The structural features identified in this study shed light on the effects of pathogenic point mutations on protein folding, inter-protein assembly and membrane interactions. Furthermore, mutations that disrupt the assembly interfaces and membrane binding of OPA1 cause mitochondrial fragmentation in cell-based assays, providing evidence of the biological relevance of these interactions.

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Primary Citation of related structures