8EDG image
Deposition Date 2022-09-04
Release Date 2023-08-02
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8EDG
Title:
Cryo-EM structure of the Hermes transposase bound to two left-ends of its DNA transposon
Biological Source:
Source Organism:
Musca domestica (Taxon ID: 7370)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.64 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hermes transposase
Mutagens:Q2E,K128G
Chain IDs:G (auth: A), H (auth: C), I, J (auth: E), K (auth: G), L (auth: K)
Chain Length:612
Number of Molecules:6
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*CP*GP*TP*GP*AP*A)-3')
Chain IDs:A (auth: M), F (auth: P)
Chain Length:7
Number of Molecules:2
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (46-MER)
Chain IDs:B (auth: N), D (auth: Q)
Chain Length:46
Number of Molecules:2
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (55-MER)
Chain IDs:C (auth: O), E (auth: R)
Chain Length:55
Number of Molecules:2
Biological Source:Musca domestica
Ligand Molecules
Primary Citation
Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding.
Nat Commun 14 4470 4470 (2023)
PMID: 37491363 DOI: 10.1038/s41467-023-40210-3

Abstact

The Hermes DNA transposon is a member of the eukaryotic hAT superfamily, and its transposase forms a ring-shaped tetramer of dimers. Our investigation, combining biochemical, crystallography and cryo-electron microscopy, and in-cell assays, shows that the full-length Hermes octamer extensively interacts with its transposon left-end through multiple BED domains of three Hermes protomers contributed by three dimers explaining the role of the unusual higher-order assembly. By contrast, the right-end is bound to no BED domains at all. Thus, this work supports a model in which Hermes multimerizes to gather enough BED domains to find its left-end among the abundant genomic DNA, facilitating the subsequent interaction with the right-end.

Legend

Protein

Chemical

Disease

Primary Citation of related structures