8EB5 image
Deposition Date 2022-08-30
Release Date 2023-08-02
Last Version Date 2024-10-02
Entry Detail
PDB ID:
8EB5
Title:
Tandem of Hermes transposase BED domain in complex with the quasi palindrome of its transposon left-end
Biological Source:
Source Organism:
Musca domestica (Taxon ID: 7370)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.23
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hermes transposase BED domain
Mutations:None
Chain IDs:A
Chain Length:78
Number of Molecules:1
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Molecule:Hermes transposon left-end subterminal repeats 1 and 2
Mutations:None
Chain IDs:B (auth: C)
Chain Length:17
Number of Molecules:1
Biological Source:Musca domestica
Polymer Type:polydeoxyribonucleotide
Molecule:Hermes transposon left-end subterminal repeats 1 and 2
Chain IDs:C (auth: D)
Chain Length:17
Number of Molecules:1
Biological Source:Musca domestica
Ligand Molecules
Primary Citation
Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding.
Nat Commun 14 4470 4470 (2023)
PMID: 37491363 DOI: 10.1038/s41467-023-40210-3

Abstact

The Hermes DNA transposon is a member of the eukaryotic hAT superfamily, and its transposase forms a ring-shaped tetramer of dimers. Our investigation, combining biochemical, crystallography and cryo-electron microscopy, and in-cell assays, shows that the full-length Hermes octamer extensively interacts with its transposon left-end through multiple BED domains of three Hermes protomers contributed by three dimers explaining the role of the unusual higher-order assembly. By contrast, the right-end is bound to no BED domains at all. Thus, this work supports a model in which Hermes multimerizes to gather enough BED domains to find its left-end among the abundant genomic DNA, facilitating the subsequent interaction with the right-end.

Legend

Protein

Chemical

Disease

Primary Citation of related structures