8E8R image
Entry Detail
PDB ID:
8E8R
EMDB ID:
Title:
9H2 Fab-Sabin poliovirus 3 complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-08-25
Release Date:
2023-06-21
Method Details:
Experimental Method:
Resolution:
2.66 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Capsid protein VP1
Chain IDs:A (auth: 1)
Chain Length:279
Number of Molecules:1
Biological Source:Human poliovirus 3 strain Sabin
Polymer Type:polypeptide(L)
Description:Capsid protein VP2
Chain IDs:B (auth: 2)
Chain Length:263
Number of Molecules:1
Biological Source:Human poliovirus 3 strain Sabin
Polymer Type:polypeptide(L)
Description:Capsid protein VP3
Chain IDs:C (auth: 3)
Chain Length:235
Number of Molecules:1
Biological Source:Human poliovirus 3 strain Sabin
Polymer Type:polypeptide(L)
Description:Capsid protein VP4
Chain IDs:D (auth: 4)
Chain Length:68
Number of Molecules:1
Biological Source:Human poliovirus 3 strain Sabin
Polymer Type:polypeptide(L)
Description:9H2 Fab heavy chain
Chain IDs:E (auth: H)
Chain Length:126
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:9H2 Fab light chain
Chain IDs:F (auth: L)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A human monoclonal antibody binds within the poliovirus receptor-binding site to neutralize all three serotypes.
Nat Commun 14 6335 6335 (2023)
PMID: 37816742 DOI: 10.1038/s41467-023-41052-9

Abstact

Global eradication of poliovirus remains elusive, and it is critical to develop next generation vaccines and antivirals. In support of this goal, we map the epitope of human monoclonal antibody 9H2 which is able to neutralize the three serotypes of poliovirus. Using cryo-EM we solve the near-atomic structures of 9H2 fragments (Fab) bound to capsids of poliovirus serotypes 1, 2, and 3. The Fab-virus complexes show that Fab interacts with the same binding mode for each serotype and at the same angle of interaction relative to the capsid surface. For each of the Fab-virus complexes, we find that the binding site overlaps with the poliovirus receptor (PVR) binding site and maps across and into a depression in the capsid called the canyon. No conformational changes to the capsid are induced by Fab binding for any complex. Competition binding experiments between 9H2 and PVR reveal that 9H2 impedes receptor binding. Thus, 9H2 outcompetes the receptor to neutralize poliovirus. The ability to neutralize all three serotypes, coupled with the critical importance of the conserved receptor binding site make 9H2 an attractive antiviral candidate for future development.

Legend

Protein

Chemical

Disease

Primary Citation of related structures