8E5F image
Deposition Date 2022-08-22
Release Date 2023-05-10
Last Version Date 2025-05-14
Entry Detail
PDB ID:
8E5F
Title:
Cryo-EM of P. calidifontis cytochrome filament
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:c-type cytochrome
Gene (Uniprot):Pcal_1490
Chain IDs:A
Chain Length:385
Number of Molecules:1
Biological Source:Pyrobaculum calidifontis
Ligand Molecules
Primary Citation
Extracellular cytochrome nanowires appear to be ubiquitous in prokaryotes.
Cell 186 2853 2864.e8 (2023)
PMID: 37290436 DOI: 10.1016/j.cell.2023.05.012

Abstact

Electrically conductive appendages from the anaerobic bacterium Geobacter sulfurreducens, recently identified as extracellular cytochrome nanowires (ECNs), have received wide attention due to numerous potential applications. However, whether other organisms employ similar ECNs for electron transfer remains unknown. Here, using cryoelectron microscopy, we describe the atomic structures of two ECNs from two major orders of hyperthermophilic archaea present in deep-sea hydrothermal vents and terrestrial hot springs. Homologs of Archaeoglobus veneficus ECN are widespread among mesophilic methane-oxidizing Methanoperedenaceae, alkane-degrading Syntrophoarchaeales archaea, and in the recently described megaplasmids called Borgs. The ECN protein subunits lack similarities in their folds; however, they share a common heme arrangement, suggesting an evolutionarily optimized heme packing for efficient electron transfer. The detection of ECNs in archaea suggests that filaments containing closely stacked hemes may be a common and widespread mechanism for long-range electron transfer in both prokaryotic domains of life.

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Primary Citation of related structures
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