8E40 image
Deposition Date 2022-08-17
Release Date 2023-01-11
Last Version Date 2025-06-04
Entry Detail
PDB ID:
8E40
Title:
Full-length APOBEC3G in complex with HIV-1 Vif, CBF-beta, and fork RNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA dC->dU-editing enzyme APOBEC-3G
Gene (Uniprot):APOBEC3G
Chain IDs:A
Chain Length:386
Number of Molecules:1
Biological Source:Macaca mulatta
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Virion infectivity factor
Chain IDs:B
Chain Length:178
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Core-binding factor subunit beta
Gene (Uniprot):CBFB
Chain IDs:C
Chain Length:157
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:RNA
Chain IDs:D (auth: R)
Chain Length:25
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:RNA
Chain IDs:E (auth: r)
Chain Length:25
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.
Sci Adv 9 eade3168 eade3168 (2023)
PMID: 36598981 DOI: 10.1126/sciadv.ade3168

Abstact

Human APOBEC3G (A3G) is a virus restriction factor that inhibits HIV-1 replication and triggers lethal hypermutation on viral reverse transcripts. HIV-1 viral infectivity factor (Vif) breaches this host A3G immunity by hijacking a cellular E3 ubiquitin ligase complex to target A3G for ubiquitination and degradation. The molecular mechanism of A3G targeting by Vif-E3 ligase is unknown, limiting the antiviral efforts targeting this host-pathogen interaction crucial for HIV-1 infection. Here, we report the cryo-electron microscopy structures of A3G bound to HIV-1 Vif in complex with T cell transcription cofactor CBF-β and multiple components of the Cullin-5 RING E3 ubiquitin ligase. The structures reveal unexpected RNA-mediated interactions of Vif with A3G primarily through A3G's noncatalytic domain, while A3G's catalytic domain is poised for ubiquitin transfer. These structures elucidate the molecular mechanism by which HIV-1 Vif hijacks the host ubiquitin ligase to specifically target A3G to establish infection and offer structural information for the rational development of antiretroviral therapeutics.

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Disease

Primary Citation of related structures
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