8E1P image
Deposition Date 2022-08-11
Release Date 2023-06-21
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8E1P
Title:
Crystal structure of BG505 SOSIP.v4.1-GT1.2 trimer in complex with gl-PGV20 and PGT124 Fabs
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.82 Å
R-Value Free:
0.30
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PGT124 Fab Light Chain
Chain IDs:G (auth: A), H (auth: C), K (auth: J)
Chain Length:214
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PGT124 Fab Heavy Chain
Chain IDs:M (auth: B), N (auth: D), O (auth: K)
Chain Length:236
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:BG505-SOSIP.v4.1-GT1.2gp120
Chain IDs:I (auth: E), J (auth: G), L (auth: M)
Chain Length:474
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:germline PGV20 heavy chain
Chain IDs:A (auth: F), B (auth: H), E (auth: N)
Chain Length:225
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:germline PGV20 light chain
Chain IDs:C (auth: I)
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:germline PGV20 light chain
Chain IDs:D (auth: L), F (auth: O)
Chain Length:210
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:P (auth: Y), Q (auth: X), R (auth: Z)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation

Abstact

Targeting germline (gl-) precursors of broadly neutralizing antibodies (bNAbs) is acknowledged as an important strategy for HIV-1 vaccines. The VRC01-class of bNAbs is attractive because of its distinct genetic signature. However, VRC01-class bNAbs often require extensive somatic hypermutation, including rare insertions and deletions. We describe a BG505 SOSIP trimer, termed GT1.2, to optimize binding to gl-CH31, the unmutated common precursor of the CH30-34 bNAb lineage that acquired a large CDRH1 insertion. The GT1.2 trimer activates gl-CH31 naive B cells in knock-in mice, and B cell responses could be matured by selected boosting immunogens to generate cross-reactive Ab responses. Next-generation B cell sequencing reveals selection for VRC01-class mutations, including insertions in CDRH1 and FWR3 at positions identical to VRC01-class bNAbs, as well as CDRL1 deletions and/or glycine substitutions to accommodate the N276 glycan. These results provide proof of concept for vaccine-induced affinity maturation of B cell lineages that require rare insertions and deletions.

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Primary Citation of related structures
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